Universality in kinetic models of circadian rhythms in Arabidopsis thaliana

DOI10.1007/s00285-021-01677-0zbMath1484.37115arXiv2103.01995OpenAlexW3206588865WikidataQ113905449 ScholiaQ113905449MaRDI QIDQ2244895

Yian Xu, Orrin Shindell, Masoud Asadi-Zeydabadi, Randall Tagg

Publication date: 12 November 2021

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/2103.01995

zbMATH Keywords

Hopf bifurcationcircadian rhythmsStuart-Landau equationArabidopsis thaliana

Mathematics Subject Classification ID

Dynamical systems in biology (37N25) Nonlinear oscillations and coupled oscillators for ordinary differential equations (34C15) Bifurcations of singular points in dynamical systems (37G10) Bifurcations of limit cycles and periodic orbits in dynamical systems (37G15) Genetics and epigenetics (92D10) Computational methods for bifurcation problems in dynamical systems (37M20) Biological rhythms and synchronization (92B25)

Uses Software

• Matlab
• ode23
• ode45
• Ode15s
• ode113
• ode23s
• MATLAB ODE suite

Cites Work

• Unnamed Item
• Are biological systems poised at criticality?
• An extended mathematical model for reproducing the phase response of \textit{Arabidopsis thaliana} under various light conditions
• Chemical oscillations, waves, and turbulence
• Genetic oscillation deduced from Hopf bifurcation in a genetic regulatory network with delays
• Nonlinear oscillations, dynamical systems, and bifurcations of vector fields
• Reducing the complexity of mathematical models for the plant circadian clock by distributed delays
• Modelling genetic networks with noisy and varied experimental data: the circadian clock in \textit{Arabidopsis thaliana}
• The MATLAB ODE Suite
• On the non-linear mechanics of hydrodynamic stability

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