Classification of genomic sequences via wavelet variance and a self-organizing map with an application to mitochondrial DNA

DOI10.2202/1544-6115.1562MaRDI QIDQ2254476zbMATH OpenOpenAlexWikidataFDO

Authors Agnieszka Jach, J. M. Marín

Publication date 5 February 2015

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.2202/1544-6115.1562

zbMATH Keywords

binary sequencesMODWTestimated wavelet varianceoligonucleotide patternssupervised Kohonen's map

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

Recommendations

• scientific article; zbMATH DE number 2084571
• Discrete wavelet packet transform based discriminant analysis for whole genome sequences
• Non-decimated wavelet analysis of biological sequences: applications to protein structure and genomics
• scientific article; zbMATH DE number 5583617
• Classification studies based on a spectral representation of DNA

Cited in

(6)

• A Dawson-like clustering of human mitochondrial DNA sequences based on protein coding region
• Non-decimated wavelet analysis of biological sequences: applications to protein structure and genomics
• Comparison of numerical representations of genomic sequences: choosing the best mapping for wavelet analysis
• Discrete wavelet packet transform based discriminant analysis for whole genome sequences
• scientific article; zbMATH DE number 2084571 (Why is no real title available?)
• Wavelet-based method to disentangle transcription- and replication-associated strand asymmetries in mammalian genomes

Describes a project that uses

Uses Software

• R

This page was built for publication: Classification of genomic sequences via wavelet variance and a self-organizing map with an application to mitochondrial DNA

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2254476)