Inferences for genotyping error rate in ancestry identification from simple sequence repeat marker profiles

DOI10.1198/JABES.2009.0011zbMATH Open1306.62372OpenAlexW1996645645MaRDI QIDQ2260083FDOQ2260083

Authors: Hongmei Zhang, Hal S. Stern 

Publication date: 5 March 2015

Published in: Journal of Agricultural, Biological and Environmental Statistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1198/jabes.2009.0011

Recommendations

• Susceptibility of Biallelic Haplotype and Genotype Frequencies to Genotyping Error
• Estimating genotyping error rates from parent-offspring dyads
• Haplotype inference for population data with genotyping errors
• Increase of rejection rate in case-control studies with the differential genotyping error rates
• Likelihood-based genetic mark-recapture estimates when genotype samples are incomplete and contain typing errors

zbMATH Keywords

maximum likelihoodgenotyping errorSSR

Mathematics Subject Classification ID

Applications of statistics to environmental and related topics (62P12)

Cites Work

• The relationship between single parent and parent pair genetic likelihoods in genealogy reconstruction

Cited In (3)

• How to estimate the measurement error variance associated with ancestry proportion estimates
• Estimating genotyping error rates from parent-offspring dyads
• Weight of the evidence of genetic investigations of ancestry informative markers

Uses Software

• Cervus

This page was built for publication: Inferences for genotyping error rate in ancestry identification from simple sequence repeat marker profiles

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2260083)