Inferences for genotyping error rate in ancestry identification from simple sequence repeat marker profiles

DOI10.1198/JABES.2009.0011MaRDI QIDQ2260083zbMATH OpenOpenAlexFDO

Authors Hongmei Zhang, Hal S. Stern

Publication date 5 March 2015

Published in Journal of Agricultural, Biological and Environmental Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1198/jabes.2009.0011

zbMATH Keywords

maximum likelihoodgenotyping errorSSR

Mathematics Subject Classification ID

Applications of statistics to environmental and related topics (62P12)

Recommendations

• Susceptibility of Biallelic Haplotype and Genotype Frequencies to Genotyping Error
• Estimating genotyping error rates from parent-offspring dyads
• Haplotype inference for population data with genotyping errors
• Increase of rejection rate in case-control studies with the differential genotyping error rates
• Likelihood-based genetic mark-recapture estimates when genotype samples are incomplete and contain typing errors

Cites work

• The relationship between single parent and parent pair genetic likelihoods in genealogy reconstruction

Cited in

(3)

• How to estimate the measurement error variance associated with ancestry proportion estimates
• Estimating genotyping error rates from parent-offspring dyads
• Weight of the evidence of genetic investigations of ancestry informative markers

Describes a project that uses

Uses Software

• Cervus

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