Review on statistical methods for gene network reconstruction using expression data
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Publication:2260287
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Cites work
- scientific article; zbMATH DE number 140408 (Why is no real title available?)
- scientific article; zbMATH DE number 3111121 (Why is no real title available?)
- A Bayesian method for the induction of probabilistic networks from data
- A General Framework for Weighted Gene Co-Expression Network Analysis
- A Tutorial on Learning with Bayesian Networks
- A nonparametric view of network models and Newman–Girvan and other modularities
- A statistical framework to infer functional gene relationships from biologically interrelated microarray experiments
- Asymptotic normality of maximum likelihood and its variational approximation for stochastic blockmodels
- Classification and estimation in the stochastic blockmodel based on the empirical degrees
- Consistency of maximum-likelihood and variational estimators in the stochastic block model
- Consistent adjacency-spectral partitioning for the stochastic block model when the model parameters are unknown
- Detecting novel associations in large data sets
- Equitability, mutual information, and the maximal information coefficient
- Estimation and Prediction for Stochastic Blockstructures
- Estimation and prediction for stochastic blockmodels for graphs with latent block structure
- Evolutionary Multi-Criterion Optimization
- Gradient directed regularization for sparse Gaussian concentration graphs, with applications to inference of genetic networks
- High-dimensional covariance estimation based on Gaussian graphical models
- Identifying gene regulatory networks from experimental data
- Introduction to Graphical Modelling
- Low-Order Conditional Independence Graphs for Inferring Genetic Networks
- Mixed membership stochastic blockmodels
- Model selection and estimation in the Gaussian graphical model
- On measures of dependence
- Partial correlation estimation by joint sparse regression models
- Pseudo-likelihood methods for community detection in large sparse networks
- Sparse inverse covariance estimation with the graphical lasso
- Spectral clustering and the high-dimensional stochastic blockmodel
- Structure learning in nested effects models
- Variational Bayesian inference and complexity control for stochastic block models
Cited in
(23)- Combining gene expression data and prior knowledge for inferring gene regulatory networks via Bayesian networks using structural restrictions
- Reverse engineering gene regulatory networks using approximate Bayesian computation
- Robust network structure reconstruction based on Bayesian compressive sensing
- Dynamic network reconstruction from heterogeneous datasets
- Assessing the validity domains of graphical Gaussian models in order to infer relationships among components of complex biological systems
- Mixed \(H_\infty / l_2 - l_\infty\) state estimation for switched genetic regulatory networks subject to packet dropouts: a persistent dwell-time switching mechanism
- The science of science: from the perspective of complex systems
- Measure of asymmetric association for ordinal contingency tables via the bilinear extension copula
- scientific article; zbMATH DE number 1950566 (Why is no real title available?)
- Network-based identification of reliable bio-markers for cancers
- Inference of biochemical S-systems via mixed-variable multiobjective evolutionary optimization
- Network modeling in biology: statistical methods for gene and brain networks
- A note on jointly modeling edges and node attributes of a network
- Inference for Nonparanormal Partial Correlation via Regularized Rank-Based Nodewise Regression
- scientific article; zbMATH DE number 6672082 (Why is no real title available?)
- Hypergraphs and centrality measures identifying key features in gene expression data
- Estimating scale-invariant directed dependence of bivariate distributions
- Integrative analysis of genetical genomics data incorporating network structures
- Efficient reengineering of meso-scale topologies for functional networks in biomedical applications
- Quantifying Cellular Pluripotency and Pathway Robustness Through Forman-Ricci Curvature
- Graphical modeling for gene set analysis: a critical appraisal
- Inferring gene-gene interactions and functional modules using sparse canonical correlation analysis
- Structure optimization for large gene networks based on greedy strategy
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