A hierarchical Dirichlet process mixture model for haplotype reconstruction from multi-popu\-la\-tion data

DOI10.1214/08-AOAS225zbMath1166.62085arXiv0812.4648MaRDI QIDQ2270673

Kyung-Ah Sohn, Eric P. Xing

Publication date: 29 July 2009

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0812.4648

zbMATH Keywords

population geneticscoalescenceDirichlet processmixture modelshierarchical Dirichlet processhaplotype inference

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15) Numerical analysis or methods applied to Markov chains (65C40) Genetics and epigenetics (92D10) Nonparametric inference (62G99)

Related Items

Hierarchical species sampling models

Uses Software

• HAPLO

Cites Work

• Pólya-like urns and the Ewens' sampling formula
• Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems
• Ferguson distributions via Polya urn schemes
• A Bayesian analysis of some nonparametric problems
• Hierarchical Dirichlet Processes
• 10.1162/jmlr.2003.3.4-5.993
• A Method for Combining Inference Across Related Nonparametric Bayesian Models
• Bayesian Density Estimation and Inference Using Mixtures
• Computational Methods for SNPs and Haplotype Inference
• Hidden Markov Dirichlet process: modeling genetic inference in open ancestral space
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