Using a VOM model for reconstructing potential coding regions in EST sequences

DOI10.1007/s00180-007-0021-8zbMath1199.62066MaRDI QIDQ2271692

Irad Ben-Gal, Armin Shmilovici

Publication date: 8 August 2009

Published in: Computational Statistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00180-007-0021-8

zbMATH Keywords

context trees; variable order Markov model; gene annotations; protein coding DNA recognition

Mathematics Subject Classification ID

62-08: Computational methods for problems pertaining to statistics

62P10: Applications of statistics to biology and medical sciences; meta analysis

92C40: Biochemistry, molecular biology

60J99: Markov processes

Uses Software

• EasyGene
• TigrScan
• GlimmerHMM
• ExonHunter
• ESTScan