Bayesian indicator variable selection to incorporate hierarchical overlapping group structure in multi-omics applications

DOI10.1214/19-AOAS1271MaRDI QIDQ2291545zbMATH OpenFDO

Authors Zhiguang Huo, Tianzhou Ma, Steffi Oesterreich, L. Zhu, George C. Tseng

Publication date 31 January 2020

Published in The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://projecteuclid.org/euclid.aoas/1574910057

zbMATH Keywords

Bayesian variable selectionhierarchical overlapping group structureoverlapping groupsspike and slab

Mathematics Subject Classification ID

Bayesian inference (62F15) Linear regression; mixed models (62J05) Ridge regression; shrinkage estimators (Lasso) (62J07) Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cites work

• A review of Bayesian variable selection methods: what, how and which
• Bayesian Analysis of Binary and Polychotomous Response Data
• Bayesian Genome- and Epigenome-Wide Association Studies with Gene Level Dependence
• Bayesian indicator variable selection to incorporate hierarchical overlapping group structure in multi-omics applications
• Bayesian variable selection and estimation for group Lasso
• Bayesian Variable Selection in Linear Regression
• Detecting differential gene expression with a semiparametric hierarchical mixture method
• scientific article; zbMATH DE number 6378011 (Why is no real title available?)
• scientific article; zbMATH DE number 845714 (Why is no real title available?)
• Identifiability, Improper Priors, and Gibbs Sampling for Generalized Linear Models
• Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
• Model Selection and Estimation in Regression with Grouped Variables
• Needles and straw in haystacks: Empirical Bayes estimates of possibly sparse sequences
• Penalized regression, standard errors, and Bayesian Lassos
• Proximal methods for hierarchical sparse coding
• Regularization and Variable Selection Via the Elastic Net
• The Bayesian Lasso
• The Calculation of Posterior Distributions by Data Augmentation
• The composite absolute penalties family for grouped and hierarchical variable selection
• Variable selection for regression models

Cited in

(6)

• Bayesian indicator variable selection to incorporate hierarchical overlapping group structure in multi-omics applications
• Bayesian variable selection in structured high-dimensional covariate spaces with applications in genomics
• A Bayesian group selection with compositional responses for analysis of radiologic tumor proportions and their genomic determinants
• Multivariate Bayesian variable selection for multi-trait genetic fine mapping
• Bayesian modeling of cancer outcomes using genetic variables assisted by pathological imaging data
• Leveraging external information by guided adaptive shrinkage to improve variable selection in high-dimensional regression settings

Describes a project that uses

Uses Software

• RcppEigen
• SLEP
• EBayesThresh

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