Performance of preconditioned iterative linear solvers for cardiovascular simulations in rigid and deformable vessels
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Publication:2322962
DOI10.1007/S00466-019-01678-3zbMATH Open1465.74166arXiv1901.07539OpenAlexW2914383744WikidataQ91892679 ScholiaQ91892679MaRDI QIDQ2322962FDOQ2322962
Authors: J. Seo, D. Schiavazzi, A. L. Marsden 
Publication date: 30 August 2019
Published in: Computational Mechanics (Search for Journal in Brave)
Abstract: Computing the solution of linear systems of equations is invariably the most time consuming task in the numerical solutions of PDEs in many fields of computational science. In this study, we focus on the numerical simulation of cardiovascular hemodynamics with rigid and deformable walls, discretized in space and time through the variational multi-scale finite element method. We focus on three approaches: the problem agnostic generalized minimum residual (GMRES) and stabilized bi-conjugate gradient (BICGS) methods, and a recently proposed, problem specific, bi-partitioned (BIPN) method. We also perform a comparative analysis of several preconditioners, including diagonal, block-diagonal, incomplete factorization, multi-grid, and resistance based methods. Solver performance and matrix characteristics (diagonal dominance, symmetry, sparsity, bandwidth and spectral properties) are first examined for an idealized cylindrical geometry with physiologic boundary conditions and then successively tested on several patient-specific anatomies representative of realistic cardiovascular simulation problems. Incomplete factorization pre-conditioners provide the best performance and results in terms of both strong and weak scalability. The BIPN method was found to outperform other methods in patient-specific models with rigid walls. In models with deformable walls, BIPN was outperformed by BICG with diagonal and Incomplete LU preconditioners.
Full work available at URL: https://arxiv.org/abs/1901.07539
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preconditioningfluid-structure interactioncardiovascular simulationiterative linear solverstabilized bi-conjugate gradient method
Biomechanical solid mechanics (74L15) Fluid-solid interactions (including aero- and hydro-elasticity, porosity, etc.) (74F10) Finite element methods applied to problems in solid mechanics (74S05) Biomechanics (92C10)
Cites Work
- Preconditioning techniques for large linear systems: A survey
- Lagrangian-Eulerian finite element formulation for incompressible viscous flows
- Title not available (Why is that?)
- Title not available (Why is that?)
- An overview of the Trilinos project
- Computational fluid-structure interaction: methods and application to a total cavopulmonary connection
- Isogeometric fluid-structure interaction: Theory, algorithms, and computations
- A coupled momentum method for modeling blood flow in three-dimensional deformable arteries
- Orderings for Incomplete Factorization Preconditioning of Nonsymmetric Problems
- A computational framework for derivative-free optimization of cardiovascular geometries
- A generalized-\(\alpha\) method for integrating the filtered Navier-Stokes equations with a stabilized finite element method
- Solution of linear systems in arterial fluid mechanics computations with boundary layer mesh refinement
- A modular numerical method for implicit 0D/3D coupling in cardiovascular finite element simulations
- A bi-partitioned iterative algorithm for solving linear systems arising from incompressible flow problems
- A new preconditioning technique for implicitly coupled multidomain simulations with applications to hemodynamics
- Impact of data distribution on the parallel performance of iterative linear solvers with emphasis on CFD of incompressible flows
- Parallel implementation of efficient preconditioned linear solver for grid-based applications in chemical physics. II: QMR linear solver
- Facsi: a block parallel preconditioner for fluid-structure interaction in hemodynamics
- Automated tuning for parameter identification and uncertainty quantification in multi-scale coronary simulations
- Optimization in cardiovascular modeling
- A generalized multi-resolution expansion for uncertainty propagation with application to cardiovascular modeling
Cited In (10)
- Multilevel and multifidelity uncertainty quantification for cardiovascular hemodynamics
- A concurrent implementation of the surrogate management framework with application to cardiovascular shape optimization
- A new preconditioning technique for implicitly coupled multidomain simulations with applications to hemodynamics
- A nonlinear elimination preconditioned Newton method with applications in arterial wall simulation
- Data-driven synchronization-avoiding algorithms in the explicit distributed structural analysis of soft tissue
- Geometric uncertainty in patient-specific cardiovascular modeling with convolutional dropout networks
- An algebraic solver for the Oseen problem with application to hemodynamics
- An ensemble solver for segregated cardiovascular FSI
- A scalable framework for the partitioned solution of fluid-structure interaction problems
- A modular framework for implicit 3D-0D coupling in cardiac mechanics
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