Magnus representation of genome sequences

DOI10.1016/j.jtbi.2019.08.004zbMath1420.92089OpenAlexW2966272486MaRDI QIDQ2324892

Shiquan Ren, Chengyuan Wu, Ke-Lin Xia, Jie Wu

Publication date: 12 September 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2019.08.004

zbMATH Keywords

sequence analysisEbola virusalignment-freegenome sequence

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

Related Items

Magnus-Representation

Uses Software

• MEGA
• LAGAN
• GitHub
• GenBank
• NINJA
• Canu

Cites Work

• Comparison of phylogenetic trees
• Optimal implementations of UPGMA and other common clustering algorithms
• Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance
• Multiple DNA and protein sequence alignment based on segment-to-segment comparison.