Magnus representation of genome sequences

DOI10.1101/588582MaRDI QIDQ2324892zbMATH OpenOpenAlexWikidataFDO

Authors Chengyuan Wu, Shiquan Ren, Jie Wu, Kelin Xia

Publication date 12 September 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

Full work available at URL https://doi.org/10.1016/j.jtbi.2019.08.004

zbMATH Keywords

sequence analysisalignment-freeEbola virusgenome sequence

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

Recommendations

• Low-dimensional representation of genomic sequences
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Cites work

• Comparison of phylogenetic trees
• Multiple DNA and protein sequence alignment based on segment-to-segment comparison.
• Optimal implementations of UPGMA and other common clustering algorithms
• Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance

Cited in

(1)

• Magnus-Representation

Describes a project that uses

Uses Software

• Canu
• GitHub
• NINJA
• GenBank
• LAGAN
• MEGA

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