Magnus representation of genome sequences

DOI10.1101/588582zbMATH Open1420.92089OpenAlexW2966272486WikidataQ92525143 ScholiaQ92525143MaRDI QIDQ2324892FDOQ2324892

Authors: Chengyuan Wu, Shiquan Ren, Jie Wu, Kelin Xia 

Publication date: 12 September 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2019.08.004

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zbMATH Keywords

sequence analysisalignment-freeEbola virusgenome sequence

Mathematics Subject Classification ID

Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20)

Cites Work

• Comparison of phylogenetic trees
• Optimal implementations of UPGMA and other common clustering algorithms
• Multiple DNA and protein sequence alignment based on segment-to-segment comparison.
• Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance

Cited In (1)

• Magnus-Representation

Uses Software

• MEGA
• LAGAN
• GenBank
• NINJA
• GitHub
• Canu

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