A penalized regression approach for DNA copy number study using the sequencing data

DOI10.1515/SAGMB-2018-0001zbMath1420.92085OpenAlexW2947407625WikidataQ92403790 ScholiaQ92403790MaRDI QIDQ2325029

Jaeeun Lee, Jie Chen

Publication date: 12 September 2019

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1515/sagmb-2018-0001

zbMATH Keywords

penalized regressionchange point analysisnext generation sequencing dataCNVsfused LASSOmodified information criterion

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Related Items (3)

A modified information criterion for tuning parameter selection in 1d fused LASSO for inference on multiple change points ⋮ Tuning parameter selection in fused lasso signal approximator with false discovery rate control ⋮ Mixed Lasso estimator for stochastic restricted regression models

Uses Software

• SQOPT
• CNV-seq

Cites Work

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• The solution path of the generalized lasso
• Application of modified information criterion to multiple change point problems
• Modeling the next generation sequencing read count data for DNA copy number variant study
• Estimating the dimension of a model
• SHRINKAGE ESTIMATION OF REGRESSION MODELS WITH MULTIPLE STRUCTURAL CHANGES
• Spatial smoothing and hot spot detection for CGH data using the fused lasso
• Sparsity and Smoothness Via the Fused Lasso
• Circular binary segmentation for the analysis of array-based DNA copy number data
• A method for calling gains and losses in array CGH data
• A Modified Bayes Information Criterion with Applications to the Analysis of Comparative Genomic Hybridization Data

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