Finding the best resolution for the Kingman-Tajima coalescent: theory and applications

DOI10.1007/s00285-014-0796-5zbMath1342.92144OpenAlexW2065812607WikidataQ43790953 ScholiaQ43790953MaRDI QIDQ2339969

Raazesh Sainudiin, Tanja Stadler, Amandine Véber

Publication date: 14 April 2015

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-014-0796-5

zbMATH Keywords

\(n\)-coalescent resolutionscomputationally efficient and statistically sufficient inferencetree shape statistics

Mathematics Subject Classification ID

Problems related to evolution (92D15) Markov chains (discrete-time Markov processes on discrete state spaces) (60J10) Protein sequences, DNA sequences (92D20) Continuous-time Markov processes on discrete state spaces (60J27)

Related Items (9)

Full likelihood inference from the site frequency spectrum based on the optimal tree resolution ⋮ An adjacent-swap Markov chain on coalescent trees ⋮ Enumeration of binary trees compatible with a perfect phylogeny ⋮ Statistical challenges in tracking the evolution of SARS-CoV-2 ⋮ The transmission process: a combinatorial stochastic process for the evolution of transmission trees over networks ⋮ Distance metrics for ranked evolutionary trees ⋮ Adaptive Preferential Sampling in Phylodynamics With an Application to SARS-CoV-2 ⋮ Developments in coalescent theory from single loci to chromosomes ⋮ Sequential importance sampling for multiresolution Kingman-Tajima coalescent counting

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