Finding the best resolution for the Kingman-Tajima coalescent: theory and applications
DOI10.1007/S00285-014-0796-5zbMATH Open1342.92144OpenAlexW2065812607WikidataQ43790953 ScholiaQ43790953MaRDI QIDQ2339969FDOQ2339969
Authors: Raazesh Sainudiin, Tanja Stadler, A. Véber
Publication date: 14 April 2015
Published in: Journal of Mathematical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s00285-014-0796-5
Recommendations
\(n\)-coalescent resolutionscomputationally efficient and statistically sufficient inferencetree shape statistics
Problems related to evolution (92D15) Protein sequences, DNA sequences (92D20) Markov chains (discrete-time Markov processes on discrete state spaces) (60J10) Continuous-time Markov processes on discrete state spaces (60J27)
Cites Work
- The coalescent
- Title not available (Why is that?)
- Title not available (Why is that?)
- Sequential Monte Carlo without likelihoods
- Approximate Bayesian computational methods
- Adaptive approximate Bayesian computation
- Title not available (Why is that?)
- Title not available (Why is that?)
- Some mathematical models from population genetics. École d'Été de Probabilités de Saint-Flour XXXIX-2009
- Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today.
- On the number of segregating sites in genetical models without recombination
- Ancestral inference in population genetics
- Monte Carlo inference methods in population genetics
- Importance sampling for Lambda-coalescents in the infinitely many sites model
- Inference in Molecular Population Genetics
- Importance sampling on coalescent histories. I
- Distributions of cherries for two models of trees
- Line-of-descent and genealogical processes, and their applications in population genetics models
- Statistical properties of segregating sites
- Sufficiency and Approximate Sufficiency
- Inference from gene trees in a subdivided population
- Title not available (Why is that?)
- Experiments with the site frequency spectrum
- Title not available (Why is that?)
- A vectorized method of importance sampling with applications to models of mutation and migration
- Disturbance attenuation and trajectory tracking via a reduced-order output feedback controller for robot manipulators
Cited In (10)
- Enumeration of binary trees compatible with a perfect phylogeny
- Full likelihood inference from the site frequency spectrum based on the optimal tree resolution
- Statistical challenges in tracking the evolution of SARS-CoV-2
- Developments in coalescent theory from single loci to chromosomes
- Sequential importance sampling for multiresolution Kingman-Tajima coalescent counting
- Adaptive Preferential Sampling in Phylodynamics With an Application to SARS-CoV-2
- The transmission process: a combinatorial stochastic process for the evolution of transmission trees over networks
- Distance metrics for ranked evolutionary trees
- An Efficient Coalescent Model for Heterochronously Sampled Molecular Data
- An adjacent-swap Markov chain on coalescent trees
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