Inferring an indeterminate string from a prefix graph
From MaRDI portal
Publication:2343296
Abstract: An itbf{indeterminate string} (or, more simply, just a itbf{string}) on an alphabet is a sequence of nonempty subsets of . We say that and itbf{match} (written ) if and only if . A itbf{feasible array} is an array of integers such that and for every , . A itbf{prefix table} of a string is an array of integers such that, for every , if and only if is the longest substring at position of s{x} that matches a prefix of s{x}. It is known from cite{CRSW13} that every feasible array is a prefix table of some indetermintate string. A itbf{prefix graph} is a labelled simple graph whose structure is determined by a feasible array s{y}. In this paper we show, given a feasible array s{y}, how to use to construct a lexicographically least indeterminate string on a minimum alphabet whose prefix table .
Recommendations
- Indeterminate strings, prefix arrays \& undirected graphs
- New bounds and extended relations between prefix arrays, border arrays, undirected graphs, and indeterminate strings
- New bounds and extended relations between prefix arrays, border arrays, undirected graphs, and indeterminate strings
- Indeterminate string inference algorithms
- Computing covers using prefix tables
Cites work
- A new approach to pattern matching in degenerate DNA/RNA sequences and distributed pattern matching
- Algorithmic Combinatorics on Partial Words
- An O(n log n) algorithm for finding all repetitions in a string
- Border array on bounded alphabet
- Counting distinct strings
- Generalized String Matching
- scientific article; zbMATH DE number 3471577 (Why is no real title available?)
- scientific article; zbMATH DE number 2052918 (Why is no real title available?)
- scientific article; zbMATH DE number 1874382 (Why is no real title available?)
- Indeterminate string inference algorithms
- Indeterminate strings, prefix arrays \& undirected graphs
- Linear time inference of strings from cover arrays using a binary alphabet (extended abstract)
- Mathematical Foundations of Computer Science 2003
- New bounds and extended relations between prefix arrays, border arrays, undirected graphs, and indeterminate strings
- Prefix table construction and conversion
- RECONSTRUCTING A SUFFIX ARRAY
- Reverse engineering prefix tables
Cited in
(13)- Reconstructing a string from its Lyndon arrays
- Constructing an indeterminate string from its associated graph
- A new approach to regular \& indeterminate strings
- Universal reconstruction of a string
- New bounds and extended relations between prefix arrays, border arrays, undirected graphs, and indeterminate strings
- New bounds and extended relations between prefix arrays, border arrays, undirected graphs, and indeterminate strings
- Computing covers using prefix tables
- Universal reconstruction of a string
- Indeterminate string inference algorithms
- IDPM: an improved degenerate pattern matching algorithm for biological sequences
- Indeterminate strings, prefix arrays \& undirected graphs
- A prefix array for parameterized strings
- Mathematical Foundations of Computer Science 2003
This page was built for publication: Inferring an indeterminate string from a prefix graph
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2343296)