MAPK's networks and their capacity for multistationarity due to toric steady states
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Publication:2344608
Abstract: Mitogen-activated protein kinase (MAPK) signaling pathways play an essential role in the transduction of environmental stimuli to the nucleus, thereby regulating a variety of cellular processes, including cell proliferation, differentiation and programmed cell death. The components of the MAPK extracellular activated protein kinase (ERK) cascade represent attractive targets for cancer therapy as their aberrant activation is a frequent event among highly prevalent human cancers. MAPK networks are a model for computational simulation, mostly using Ordinary and Partial Differential Equations. Key results showed that these networks can have switch-like behavior, bistability and oscillations. In this work, we consider three representative ERK networks, one with a negative feedback loop, which present a binomial steady state ideal under mass-action kinetics. We therefore apply the theoretical result present in P'erez Mill'an et. al (2012) to find a set of rate constants that allow two significantly different stable steady states in the same stoichiometric compatibility class for each network. Our approach makes it possible to study certain aspects of the system, such as multistationarity, without relying on simulation, since we do not assume a priori any constant but the topology of the network. As the performed analysis is general it could be applied to many other important biochemical networks.
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Cited in
(15)- Bifurcations and chaos in the MAPK signaling cascade
- Regions of multistationarity in cascades of Goldbeter-Koshland loops
- Symbolic analysis of multiple steady states in a MAPK chemical reaction network
- The potential for signal integration and processing in interacting MAP kinase cascades
- Identifying the parametric occurrence of multiple steady states for some biological networks
- A global convergence result for processive multisite phosphorylation systems
- An all-encompassing global convergence result for processive multisite phosphorylation systems
- Emergence of oscillations in a mixed-mechanism phosphorylation system
- Structural properties of the MAPK pathway topologies in PC12 cells
- Multistationarity in the activation of a MAPK: parametrizing the relevant region in parameter space
- Bayesian inference for the MAPK/ERK pathway by considering the dependency of the kinetic parameters
- Stability analysis of a signaling circuit with dual species of gtpase switches
- The interplay of double phosphorylation and scaffolding in MAPK pathways
- Multistationarity in mass action networks with applications to ERK activation
- Detecting binomiality
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