Bayesian semiparametric model for pathway-based analysis with zero-inflated clinical outcomes

DOI10.1007/S13253-016-0264-3zbMATH Open1367.62304OpenAlexW2519667455MaRDI QIDQ2363720FDOQ2363720

Authors: Lulu Cheng, In Young Kim, Herbert Pang 

Publication date: 26 July 2017

Published in: Journal of Agricultural, Biological and Environmental Statistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s13253-016-0264-3

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zbMATH Keywords

Gaussian processmarginal likelihoodmixed modelzero-inflated Poissonpathway based analysisunknown link

Mathematics Subject Classification ID

Bayesian inference (62F15) Nonparametric regression and quantile regression (62G08) Applications of statistics to environmental and related topics (62P12)

Cites Work

• Inference from iterative simulation using multiple sequences
• Negative Binomial Regression
• Markov Chain Monte Carlo Convergence Diagnostics: A Comparative Review
• Generalized linear models with unknown link functions
• Practical Markov Chain Monte Carlo
• Title not available (Why is that?)
• Marginal Likelihood From the Metropolis–Hastings Output
• Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
• A note on acceptance rate criteria for CLTS for Metropolis–Hastings algorithms
• Semiparametric Regression of Multidimensional Genetic Pathway Data: Least‐Squares Kernel Machines and Linear Mixed Models
• Title not available (Why is that?)
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• Powerful tests for detecting a gene effect in the presence of possible gene-gene interactions using garrote kernel machines
• Flexible variable selection for recovering sparsity in nonadditive nonparametric models
• Logistic regression models.

Cited In (3)

• A Bayesian nonparametric model for zero‐inflated outcomes: Prediction, clustering, and causal estimation
• Semiparametric kernel-based regression for evaluating interaction between pathway effect and covariate
• Statistical properties on semiparametric regression for evaluating pathway effects

Uses Software

• COUNT
• boost

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