Piecewise-linear models of genetic regulatory networks: equilibria and their stability
From MaRDI portal
Publication:2369327
DOI10.1007/S00285-005-0338-2zbMATH Open1091.92030OpenAlexW2024195317WikidataQ51963370 ScholiaQ51963370MaRDI QIDQ2369327FDOQ2369327
Authors: Yanyan Li 
Publication date: 9 May 2006
Published in: Journal of Mathematical Biology (Search for Journal in Brave)
Full work available at URL: https://hal.inria.fr/inria-00071250/file/RR-5353.pdf
Recommendations
- State transition graph and stability of singular equilibria for piecewise linear biological models
- Stability of stationary solutions of piecewise affine differential equations describing gene regulatory networks
- Filippov solutions in the analysis of piecewise linear models describing gene regulatory networks
- scientific article; zbMATH DE number 5872239
- Differential inclusions and Filippov solutions in the analysis of piecewise linear models describing gene regulatory networks
Biochemistry, molecular biology (92C40) Qualitative investigation and simulation of ordinary differential equation models (34C60) Ordinary differential inclusions (34A60) Stability theory for ordinary differential equations (34D99)
Cites Work
- Sliding modes in control and optimization. Transl. from the Russian
- Identification of all steady states in large networks by logical analysis
- Qualitative simulation of the initiation of sporulation in \textit{Bacillus subtilis}
- Qualitative simulation of genetic regulatory networks using piecewise-linear models
- Optimization and nonsmooth analysis
- Title not available (Why is that?)
- Title not available (Why is that?)
- Title not available (Why is that?)
- Dynamical systems: Stability theory and applications
- Title not available (Why is that?)
- Grazing, skipping and sliding: Analysis of the non-smooth dynamics of the DC/DC buck converter
- Multiple Lyapunov functions and other analysis tools for switched and hybrid systems
- Computation of piecewise quadratic Lyapunov functions for hybrid systems
- Dynamics and bifurcations of non-smooth mechanical systems
- Lyapunov stability theory of nonsmooth systems
- A methodological basis for description and analysis of systems with complex switch-like interactions
- Planar systems of piecewise linear differential equations with a line of discontinuity
- A calculus for computing Filippov's differential inclusion with application to the variable structure control of robot manipulators
- Qualitative dynamics of piecewise-linear differential equations: a discrete mapping approach
- A class of piecewise linear differential equations arising in biological models
- Analysis of continuous-time switching networks
- Analysis and generic properties of gene regulatory networks with graded response functions
- Global analysis of steady points for systems of differential equations with sigmoid interactions
- Logical identification of all steady states: The concept of feedback loop characteristic states
- Stable oscillations in mathematical models of biological control systems
- Compensator based output feedback sliding mode controller design
- Hybrid Systems: Computation and Control
- Dynamical behaviour of biological regulatory networks. I: Biological role of feedback loops and practical use of the concept of the loop- characteristic state
- Periodic solutions in systems of piecewise- linear differential equations
- Hybrid Systems: Computation and Control
- Title not available (Why is that?)
- The increasingly complex structure of the bifurcation tree of a piecewise-smooth system
- Lyapunov functions for Lotka-Volterra predator-prey models with optimal foraging behavior
- Molecular interaction maps as information organizers and simulation guides
Cited In (86)
- Structural stability for 2-dimensional piecewise smooth vector fields where the switching manifold is a double discontinuity
- Hierarchy of models: From qualitative to quantitative analysis of circadian rhythms in cyanobacteria
- Embedded control of cell growth using tunable genetic systems
- Piecewise Smooth Models of Pumping a Child's Swing
- Title not available (Why is that?)
- Piecewise linear and Boolean models of chemical reaction networks
- Loss of determinacy at small scales, with application to multiple timescale and nonsmooth dynamics
- Stability and bifurcation analysis of Filippov food chain system with food chain control strategy
- Applying differential dynamic logic to reconfigurable biological networks
- Dynamical systems coupled with monotone set-valued operators: formalisms, applications, well-posedness, and stability
- Convergence and synchronization in networks of piecewise-smooth systems via distributed discontinuous coupling
- Qualitative Behavior of a Metabolic Pathway with Hybrid Feedback
- Qualitative control of undesired oscillations in a genetic negative feedback loop with uncertain measurements
- On convergence for hybrid models of gene regulatory networks under polytopic uncertainties: a Lyapunov approach
- Topology-induced dynamics in a network of synthetic oscillators with piecewise affine approximation
- State transition graph and stability of singular equilibria for piecewise linear biological models
- Analytic solutions for the circadian oscillator characterize cycle dynamics and its robustness
- A new prescribed-time stability theorem for impulsive piecewise-smooth systems and its application to synchronization in networks
- Genetically Regulated Metabolic Networks: Gale-Nikaido Modules and Differential Inequalities
- Sensitive dependence on initial conditions in gene networks
- Oscillations and multiple equilibria in microvascular blood flow
- Title not available (Why is that?)
- Qualitative simulation of genetic regulatory networks using piecewise-linear models
- Introduction to focus issue: quantitative approaches to genetic networks
- A class of piecewise linear differential equations arising in biological models
- Robust \(\mu\)-stability analysis of Markovian switching uncertain stochastic genetic regulatory networks with unbounded time-varying delays
- Stability of stationary solutions of piecewise affine differential equations describing gene regulatory networks
- Uncovering operational interactions in genetic networks using asynchronous Boolean dynamics
- Periodic solutions of gene networks with steep sigmoidal regulatory functions
- Modeling gene regulatory networks with piecewise linear differential equations
- Design of regulation and dynamics in simple biochemical pathways
- Dynamics of a driven oscillator carrying a freely sliding mass
- Robust stabilization and \(H_\infty\) controllers design for stochastic genetic regulatory networks with time-varying delays and structured uncertainties
- Multistability and oscillations in genetic control of metabolism
- Stochastic stability of Markovian switching genetic regulatory networks
- Exact control of genetic networks in a qualitative framework: the bistable switch example
- Polynomial representations of piecewise-linear differential equations arising from gene regulatory networks
- BIPOLAR LINEAR ALGEBRA AND YINYANG-N-ELEMENT CELLULAR NETWORKS FOR EQUILIBRIUM-BASED BIOSYSTEM SIMULATION AND REGULATION
- A survey of numerical methods for IVPs of ODEs with discontinuous right-hand side
- Dynamics of simple balancing models with time-delayed switching feedback control
- Fundamental matrix solutions of piecewise smooth differential systems
- Periodic oscillations for nonmonotonic smooth negative feedback circuits
- Time-delayed models of gene regulatory networks
- On the use of blowup to study regularizations of singularities of piecewise smooth dynamical systems in \(\mathbb{R}^3\)
- Robust \(H_\infty\) control of discrete switched system with time delay
- On the Gause predator-prey model with a refuge: a fresh look at the history
- Limit cycles in piecewise-affine gene network models with multiple interaction loops
- Convergence properties of posttranslationally modified protein-protein switching networks with fast decay rates
- Nonlinear and temporal multiscale dynamics of gene regulatory networks: a qualitative simulator
- Comparing different ODE modelling approaches for gene regulatory networks
- Filippov solutions in the analysis of piecewise linear models describing gene regulatory networks
- Numerical simulation of piecewise-linear models of gene regulatory networks using complementarity systems
- A survey on piecewise-linear models of regulatory dynamical systems
- Discrete time piecewise affine models of genetic regulatory networks
- A modelling framework for gene regulatory networks including transcription and translation
- Computational techniques to locate crossing/sliding regions and their sets of attraction in non-smooth dynamical systems
- Set-values filtering for discrete time-delay genetic regulatory networks with time-varying para\-meters
- On the equivalence between the sigmoidal approach and Utkin's approach for piecewise-linear models of gene regulatory networks
- Links between topology of the transition graph and limit cycles in a two-dimensional piecewise affine biological model
- Differential inclusions and Filippov solutions in the analysis of piecewise linear models describing gene regulatory networks
- Microbial metabolism and growth under conditions of starvation modelled as the sliding mode of a differential inclusion
- Continuous-switch piecewise quadratic models of biological networks: application to bacterial growth
- Passivity analysis for stochastic Markovian switching genetic regulatory networks with time-varying delays
- Equilibria and their stability in networks with steep sigmoidal nonlinearities
- Control design for sustained oscillation in a two-gene regulatory network
- Chaotic dynamics in an electronic model of a genetic network
- Periodicity in piecewise-linear switching networks with delay
- Sliding motion on discontinuity surfaces of high co-dimension. A construction for selecting a Filippov vector field
- Dynamical analysis in a piecewise smooth predator–prey model with predator harvesting
- Modeling and analysis of gene regulatory networks
- Stability of genetic regulatory networks with interval time-varying delays and stochastic perturbation
- A model for the hepatic glucose metabolism based on Hill and step functions
- A Stability Result for Periodic Solutions of Nonmonotonic Smooth Negative Feedback Systems
- Regularizing piecewise smooth differential systems: co-dimension 2 discontinuity surface
- Stability analysis for genetic regulatory networks with delays: the continuous-time case and the discrete-time case
- Probabilistic approach for predicting periodic orbits in piecewise affine differential models
- Dynamics of complex feedback architectures in metabolic pathways
- Global dynamics for switching systems and their extensions by linear differential equations
- Structural principles for complex dynamics in glass networks
- Explicit construction of chaotic attractors in Glass networks
- A Lyapunov function for piecewise-independent differential equations: stability of the ideal free distribution in two patch environments
- Structural principles for periodic orbits in Glass networks
- Local Identification of Piecewise Deterministic Models of Genetic Networks
- Two-fold singularities in nonsmooth dynamics -- higher dimensional analogs
- Computing Equilibrium Points of Genetic Regulatory Networks
- Inferring parameters of prey switching in a 1 predator-2 prey plankton system with a linear preference tradeoff
Uses Software
This page was built for publication: Piecewise-linear models of genetic regulatory networks: equilibria and their stability
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2369327)
