Simulation of stochastic diffusion via first exit times
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Publication:2374739
DOI10.1016/j.jcp.2015.07.065zbMath1349.92055OpenAlexW2160465262WikidataQ43163148 ScholiaQ43163148MaRDI QIDQ2374739
Publication date: 5 December 2016
Published in: Journal of Computational Physics (Search for Journal in Brave)
Full work available at URL: http://europepmc.org/articles/pmc4653746
Computational methods for problems pertaining to probability theory (60-08) Biochemistry, molecular biology (92C40) Diffusion processes (60J60) Computational methods for problems pertaining to biology (92-08)
Related Items (8)
Mean exit time in irregularly-shaped annular and composite disc domains ⋮ Analysis and Design of Jump Coefficients in Discrete Stochastic Diffusion Models ⋮ Multiscale Simulation of Stochastic Reaction-Diffusion Networks ⋮ Exponential and Weibull models for spherical and spherical-shell diffusion-controlled release systems with semi-absorbing boundaries ⋮ Simplified models of diffusion in radially-symmetric geometries ⋮ Multiscale modeling of diffusion in a crowded environment ⋮ Effects of different discretisations of the Laplacian upon stochastic simulations of reaction-diffusion systems on both static and growing domains ⋮ Spatial stochastic intracellular kinetics: a review of modelling approaches
Uses Software
Cites Work
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- A first-passage kinetic Monte Carlo method for reaction-drift-diffusion processes
- An improved monotone finite volume scheme for diffusion equation on polygonal meshes
- Perturbation bounds for the linear least squares problem subject to linear inequality constraints
- Non-negative mixed finite element formulations for a tensorial diffusion equation
- Solving the chemical master equation for monomolecular reaction systems analytically
- A first-passage kinetic Monte Carlo algorithm for complex diffusion-reaction systems
- A monotone finite volume method for advection-diffusion equations on unstructured polygonal meshes
- Sufficient criteria are necessary for monotone control volume methods
- Tiling space and slabs with acute tetrahedra.
- A hierarchy of approximations of the master equation scaled by a size parameter
- A Guide to First-Passage Processes
- Coupled Mesoscopic and Microscopic Simulation of Stochastic Reaction-Diffusion Processes in Mixed Dimensions
- Using Gene Expression Noise to Understand Gene Regulation
- Analysis and Design of Jump Coefficients in Discrete Stochastic Diffusion Models
- Simulation of Stochastic Reaction-Diffusion Processes on Unstructured Meshes
- Quality Triangulations with Locally Optimal Steiner Points
- On Nonobtuse Simplicial Partitions
- Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
- Mixed and Hybrid Finite Element Methods
- A monotone finite element scheme for convection-diffusion equations
- Weakened acute type condition for tetrahedral triangulations and the discrete maximum principle
- Stabilized Galerkin approximation of convection-diffusion-reaction equations: discrete maximum principle and convergence
- On the existence of maximum principles in parabolic finite element equations
- A cell-centred finite-volume approximation for anisotropic diffusion operators on unstructured meshes in any space dimension
- Incorporating Diffusion in Complex Geometries into Stochastic Chemical Kinetics Simulations
- Solutions of ordinary differential equations as limits of pure jump markov processes
- Limit theorems for sequences of jump Markov processes approximating ordinary differential processes
- Stochastic approach to chemical kinetics
- Quantum noise. A handbook of Markovian and non-Markovian quantum stochastic methods with applications to quantum optics.
- Stochastic differential equations. An introduction with applications.
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