The fshape framework for the variability analysis of functional shapes

DOI10.1007/S10208-015-9288-2MaRDI QIDQ2397743zbMATH OpenOpenAlexFDO

Authors B. Charlier, Nicolas Charon, Alain Trouvé

Publication date 23 May 2017

Published in Foundations of Computational Mathematics (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1404.6039

zbMATH Keywords

atlas estimation algorithmsexistence of an optimal solutionKarcher meanslarge deformation modelsmetamorphosesshape analysissignals on manifoldsvarifolds

Mathematics Subject Classification ID

Discrete approximations in optimal control (49M25) Optimization of shapes other than minimal surfaces (49Q10) Geometry of quantum groups (58B32) Applications of variational problems in infinite-dimensional spaces to the sciences (58E50) Computer graphics; computational geometry (digital and algorithmic aspects) (68U05) Computing methodologies for image processing (68U10)

Abstract: This article introduces a full mathematical and numerical framework for treating functional shapes (or fshapes) following the landmarks of shape spaces and shape analysis. Functional shapes can be described as signal functions supported on varying geometrical supports. Analysing variability of fshapes' ensembles require the modelling and quantification of joint variations in geometry and signal, which have been treated separately in previous approaches. Instead, building on the ideas of shape spaces for purely geometrical objects, we propose the extended concept of fshape bundles and define Riemannian metrics for fshape metamorphoses to model geometrico-functional transformations within these bundles. We also generalize previous works on data attachment terms based on the notion of varifolds and demonstrate the utility of these distances. Based on these, we propose variational formulations of the atlas estimation problem on populations of fshapes and prove existence of solutions for the different models. The second part of the article examines the numerical implementation of the models by detailing discrete expressions for the metrics and gradients and proposing an optimization scheme for the atlas estimation problem. We present a few results of the methodology on a synthetic dataset as well as on a population of retinal membranes with thickness maps.

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Cited in

(17)

• Metamorphoses of functional shapes in Sobolev spaces
• Metrics, quantization and registration in varifold spaces
• A numerical framework for elastic surface matching, comparison, and interpolation
• Functional random effects modeling of brain shape and connectivity
• Nonlinear flag manifolds as coadjoint orbits
• Functional currents: a new mathematical tool to model and analyse functional shapes
• Representation of surfaces with normal cycles and application to surface registration
• Estimation of a growth development with partial diffeomorphic mappings
• Functional map networks for analyzing and exploring large shape collections
• Mechanistic Modeling of Longitudinal Shape Changes: Equations of Motion and Inverse Problems
• Statistical analysis of functions on surfaces, with an application to medical imaging
• Kernel metrics on normal cycles and application to curve matching
• A coherent framework for learning spatiotemporal piecewise-geodesic trajectories from longitudinal manifold-valued data
• A Riemann manifold model framework for longitudinal changes in physical activity patterns
• HV geometry for signal comparison
• The matching problem between functional shapes via a \(BV\) penalty term: a \(\Gamma\)-convergence result
• Tree inference with varifold distances

Describes a project that uses

Uses Software

• LDDMM
• fshapesTk
• GitHub

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