Joint genome-wide prediction in several populations accounting for randomness of genotypes: a hierarchical Bayes approach. II: Multivariate spike and slab priors for marker effects and derivation of approximate Bayes and fractional Bayes factors for the c

DOI10.1016/J.JTBI.2016.12.022MaRDI QIDQ2399628zbMATH OpenOpenAlexWikidataFDO

Authors Carlos Alberto Martínez, Kshitij Khare, Arunava Banerjee, Mauricio Elzo

Publication date 24 August 2017

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2016.12.022

zbMATH Keywords

Laplace approximationgenetic heterogeneityBayesian whole-genome regressionsfinite mixture priorsmulti-population genome-enabled prediction

Mathematics Subject Classification ID

Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 1220667 (Why is no real title available?)
• scientific article; zbMATH DE number 720676 (Why is no real title available?)
• scientific article; zbMATH DE number 872117 (Why is no real title available?)
• scientific article; zbMATH DE number 3347516 (Why is no real title available?)
• scientific article; zbMATH DE number 3189754 (Why is no real title available?)
• Accurate Approximations for Posterior Moments and Marginal Densities
• An introduction to Bayesian analysis. Theory and methods.
• Approximate Bayes factors and accounting for model uncertainty in generalised linear models
• Bayesian Measures of Model Complexity and Fit
• Bayesian Variable Selection in Linear Regression
• Bayesian variable selection and estimation for group Lasso
• Computing Bayes Factors by Combining Simulation and Asymptotic Approximations
• Estimating Bayes Factors via Posterior Simulation With the Laplace-Metropolis Estimator
• Incorporating genetic heterogeneity in whole-genome regressions using interactions
• Plane Answers to Complex Questions
• The Deviance Information Criterion: 12 Years on

Cited in

(3)

• Modeling correlated marker effects in genome-wide prediction via Gaussian concentration graph models
• An integrated approach to empirical Bayesian whole genome prediction modeling
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