MethCP: differentially methylated region detection with change point models

DOI10.1007/978-3-030-17083-7_5MaRDI QIDQ2415244zbMATH OpenOpenAlexFDO

Authors Boying Gong, Elizabeth Purdom

Publication date 21 May 2019

Copyright license Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

Full work available at URL https://doi.org/10.1101/265116

zbMATH Keywords

bisulfite sequencingchange point detectiondifferential methylation

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

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Cited in

(5)

• Assessing genome-wide significance for the detection of differentially methylated regions
• Differential methylation tests of regulatory regions
• Comparing five statistical methods of differential methylation identification using bisulfite sequencing data
• Error correction in methylation profiling from NGS bisulfite protocols
• MethCP

Describes a project that uses

Uses Software

• methylKit
• metilene
• HMM-Fisher
• HMM-DM
• BSmooth
• GitHub

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