An efficient, nonlinear stability analysis for detecting pattern formation in reaction diffusion systems
From MaRDI portal
Publication:2440894
Abstract: Reaction diffusion systems are often used to study pattern formation in biological systems. However, most methods for understanding their behavior are challenging and can rarely be applied to complex systems common in biological applications. I present a relatively simple and efficient, non-linear stability technique that greatly aids such analysis when rates of diffusion are substantially different. This technique reduces a system of reaction diffusion equations to a system of ordinary differential equations tracking the evolution of a large amplitude, spatially localized perturbation of a homogeneous steady state. Stability properties of this system, determined using standard bifurcation techniques and software, describe both linear and non-linear patterning regimes of the reaction diffusion system. I describe the class of systems this method can be applied to and demonstrate its application. Analysis of Schnakenberg and substrate inhibition models is performed to demonstrate the methods capabilities in simplified settings and show that even these simple models have non-linear patterning regimes not previously detected. Analysis of a protein regulatory network related to chemotaxis shows its application in a more complex setting where other non-linear methods become intractable. Predictions of this method are verified against results of numerical simulation, linear stability, and full PDE bifurcation analyses.
Recommendations
- Spatial pattern formation in reaction-diffusion models: a computational approach
- A robust and efficient method for steady state patterns in reaction-diffusion systems
- Bifurcation analysis of reaction diffusion systems on arbitrary surfaces
- Direct discontinuous Galerkin method for nonlinear reaction-diffusion systems in pattern formation
- Instability of Turing patterns in reaction-diffusion-ODE systems
Cites work
- A mathematical mechanism for instabilities in stripe formation on growing domains
- A Metastable Spike Solution for a Nonlocal Reaction-Diffusion Model
- A model for intracellular actin waves explored by nonlinear local perturbation analysis
- A theory of biological pattern formation
- Allee dynamics and the spread of invading organisms
- An explicit theory for pulses in two component, singularly perturbed, reaction-diffusion equations
- Asymptotic and bifurcation analysis of wave-pinning in a reaction-diffusion model for cell polarization
- COMPUTER TOOLS FOR BIFURCATION ANALYSIS: GENERAL APPROACH WITH APPLICATION TO DYNAMICAL AND DISTRIBUTED SYSTEMS
- Dynamical transitions of Turing patterns
- Global Structure of Bifurcating Solutions of Some Reaction-Diffusion Systems
- Hysteresis, oscillations, and pattern formation in realistic immobilized enzyme systems
- MATCONT
- Mathematical biology. Vol. 1: An introduction.
- Mathematical model for spatial segregation of the rho-family gtpases based on inhibitory crosstalk
- Mode transitions in a model reaction-diffusion system driven by domain growth and noise
- Nonlinear Asymptotic Stability of the Semistrong Pulse Dynamics in a Regularized Gierer–Meinhardt Model
- Nonlinear Patterns in Urban Crime: Hotspots, Bifurcations, and Suppression
- On the global existence and finite time blow-up of shadow systems
- Pattern formation, long-term transients, and the Turing-Hopf bifurcation in a space- and time-discrete predator-prey system
- Polarization and movement of keratocytes: a multiscale modelling approach
- Pulses in a Gierer-Meinhardt equation with a slow nonlinearity
- Pulse‐Splitting for Some Reaction‐Diffusion Systems in One‐Space Dimension
- Reaction and diffusion on growing domains: scenarios for robust pattern formation
- Rise and fall of periodic patterns for a generalized Klausmeier-Gray-Scott model
- Stability analysis of singular patterns in the 1D Gray-Scott model: a matched asymptotics approach
- Stability analysis of Turing patterns generated by the Schnakenberg model
- The chemical basis of morphogenesis
- The Existence and Stability of Asymmetric Spike Patterns for the Schnakenberg Model
- The existence and stability of spike equilibria in the one-dimensional Gray-Scott model: the pulse-splitting regime
- The Existence and Stability of Spike Equilibria in the One‐Dimensional Gray–Scott Model: The Low Feed‐Rate Regime
Cited in
(18)- Fast high-order method for multi-dimensional space-fractional reaction-diffusion equations with general boundary conditions
- A different approach for conformable fractional biochemical reaction-diffusion models
- Fourier spectral method for higher order space fractional reaction-diffusion equations
- High-order time stepping Fourier spectral method for multi-dimensional space-fractional reaction-diffusion equations
- A generalized Degn-Harrison reaction-diffusion system: asymptotic stability and non-existence results
- A coupled bulk-surface model for cell polarisation
- Bifurcation analysis of reaction diffusion systems on arbitrary surfaces
- Spots, stripes, and spiral waves in models for static and motile cells. GTPase patterns in cells
- A robust and efficient method for steady state patterns in reaction-diffusion systems
- On accurately estimating stability thresholds for periodic spot patterns of reaction-diffusion systems in2
- Analysis of mathematics and numerical pattern formation in superdiffusive fractional multicomponent system
- Turing instabilities are not enough to ensure pattern formation
- Pattern Formation Inside Living Cells
- Wave-Pinned Patterns for Cell Polarity—A Catastrophe Theory Explanation
- Emergence of non-trivial solutions from trivial solutions in reaction-diffusion equations for pattern formation
- A new concept of instability and spatial patterns
- Bifurcation analysis of a self-organizing signaling system for eukaryotic chemotaxis
- Early-warning signs for pattern-formation in stochastic partial differential equations
This page was built for publication: An efficient, nonlinear stability analysis for detecting pattern formation in reaction diffusion systems
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2440894)
