Localization of electronic states in chain models based on real DNA sequence

DOI10.1016/J.PHYSLETA.2004.09.041MaRDI QIDQ2463019zbMATH OpenOpenAlexFDO

Authors Hiroaki Yamada

Publication date 5 December 2007

Published in Physics Letters. A (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/cond-mat/0406040

zbMATH Keywords

correlationdelocalizationDNA sequenceelectronic stateslocalizationLyapunov exponent

Mathematics Subject Classification ID

Statistical mechanics of random media, disordered materials (including liquid crystals and spin glasses) (82D30) Protein sequences, DNA sequences (92D20)

Abstract: We investigate the localization property of an electron in the disordered two-chain system (ladder model) with long-range correlation as a simple model for electronic property in DNA sequence. The chains are constructed by repetition of the sugar-phosphate sites, and the inter-chain hopping at the sugar sites come from nucleotide pairs, i.e., $A-T$ or $G-C$ pairs. It has been found that some DNA sequences have long-range correlation. In this paper we use some actual DNA sequences such as bacteriophages of escherichia coli, human omosome 22 and histone protein as the correlated sequence for the interchain hopping at the sugar sites. We will present some numerical results for the Lyapunov exponent (inverse localization length) of the wave function in the cases in comparison to the results for artificial sequence generated by an asymmetric modified Bernoulli map. It is shown that the correlation and asymmetry of the sequence affect on the localization in both the artificial and real DNA sequences.

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Cites work

• Analysis of symbolic sequences using the Jensen-Shannon divergence
• Comments on the non-stationary chaos
• Complexity
• scientific article; zbMATH DE number 1236223 (Why is no real title available?)
• Nonlinear charge transport mechanism in periodic and disordered DNA
• Products of random matrices in statistical physics

Cited in

(8)

• Coherent potential approximation approach to electronic structure of DNA
• A renormalization approach to describe charge transport in quasiperiodic dangling backbone ladder (DBL)-DNA molecules
• Band structure of the spectra of Hamiltonians of regular polynucleotide duplexes
• Localization of the electronic states in non-stationary chaotic field with long-range correlation: off-diagonal model
• Nanoelectronics of a DNA molecule
• RENORMALIZATION SCHEME TO THE CHARGE TRANSFER EFFICIENCY OF SINGLE-STRAND DNA WITH LONG RANGE CORRELATED DISORDER
• Absence of zero-temperature transmission rate of a double-chain tight-binding model for DNA with random sequence of nucleotides in thermodynamic limit
• Metal-insulator transition in DNA molecules induced by long-range correlations in the sequence of nucleotides

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