A parallel multistart algorithm for the closest string problem

DOI10.1016/J.COR.2007.04.002MaRDI QIDQ2483510zbMATH OpenOpenAlexFDO

Authors Fernando C. Gomes, Panos M. Pardalos, Gerardo Valdisio R. Viana, Cláudio N. Meneses

Publication date 28 April 2008

Published in Computers \& Operations Research (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.cor.2007.04.002

zbMATH Keywords

closest string problemparallel algorithmssequence analysis

Mathematics Subject Classification ID

Parallel numerical computation (65Y05) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) Theory of error-correcting codes and error-detecting codes (94B99)

Recommendations

• Randomized and Parameterized Algorithms for the Closest String Problem
• Fixed-parameter algorithms for CLOSEST STRING and related problems
• scientific article; zbMATH DE number 1263250
• A SPACE EFFICIENT BIT-PARALLEL ALGORITHM FOR THE MULTIPLE STRING MATCHING PROBLEM
• Randomized fixed-parameter algorithms for the closest string problem
• A recursive exact algorithm for the closest string problem
• scientific article; zbMATH DE number 710402
• Optimal parallel algorithms for string matching
• A constant-time optimal parallel string-matching algorithm
• A Parallel Algorithm for Fixed-Length Approximate String-Matching with k-mismatches

Cites work

• scientific article; zbMATH DE number 1305511 (Why is no real title available?)
• Distinguishing string selection problems.
• On the closest string and substring problems
• Optimal solutions for the closest-string problem via integer programming

Cited in

(11)

• An optimization modelling for string selection in molecular biology using Pareto optimality
• A combined greedy-walk heuristic and simulated annealing approach for the closest string problem
• Parallel metaheuristics: recent advances and new trends
• A GRASP algorithm for the closest string problem using a probability-based heuristic
• Exact algorithm and heuristic for the closest string problem
• Improved optimization modelling for the closest string and related problems
• An improved integer linear programming formulation for the closest 0-1 string problem
• On some multiobjective optimization problems arising in biology
• Parallel computational optimization in operations research: a new integrative framework, literature review and research directions
• A heuristic algorithm based on Lagrangian relaxation for the closest string problem
• Efficient solutions for the far from most string problem

Describes a project that uses

Uses Software

• CPLEX

This page was built for publication: A parallel multistart algorithm for the closest string problem

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2483510)