An equation-free computational approach for extracting population-level behavior from individual-based models of biological dispersal

DOI10.1016/j.physd.2006.01.008zbMath1094.35127arXivphysics/0505179MaRDI QIDQ2489660

Radek Erban, Hans G. Othmer, Ioannis G. Kevrekidis

Publication date: 28 April 2006

Published in: Physica D (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/physics/0505179

zbMATH Keywords

Monte Carlo simulations; Random walk; Projective integration; Chemotaxis; Individual-based models; Coarse integration

Mathematics Subject Classification ID

92D25: Population dynamics (general)

60J70: Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.)

92C17: Cell movement (chemotaxis, etc.)

Related Items

Taxis equations for amoeboid cells, From microscopic to macroscopic descriptions of cell migration on growing domains, Projective and coarse projective integration for problems with continuous symmetries

Cites Work

• Models of dispersal in biological systems
• Adaptive mesh refinement for hyperbolic partial differential equations
• The heterogeneous multiscale methods
• Model for chemotaxis
• Traveling bands of chemotactic bacteria: a theoretical analysis
• Taxis equations for amoeboid cells
• The Boltzmann equation and its applications
• High order explicit methods for parabolic equations
• The gap-tooth method in particle simulations
• Adaptive mesh and algorithm refinement using direct simulation Monte Carlo
• Diffusion maps, spectral clustering and reaction coordinates of dynamical systems
• Equation-free, coarse-grained multiscale computation: enabling microscopic simulators to perform system-level analysis
• Deciding the Nature of the Coarse Equation through Microscopic Simulations: The Baby-Bathwater Scheme
• Projective Methods for Stiff Differential Equations: Problems with Gaps in Their Eigenvalue Spectrum
• From Individual to Collective Behavior in Bacterial Chemotaxis
• From Signal Transduction to Spatial Pattern Formation inE. coli: A Paradigm for Multiscale Modeling in Biology
• The Gap-Tooth Scheme for Homogenization Problems
• Application of Coarse Integration to Bacterial Chemotaxis
• Projecting to a Slow Manifold: Singularly Perturbed Systems and Legacy Codes
• Hyperbolic models for chemotaxis in 1-D
• Unnamed Item
• Unnamed Item
• Unnamed Item