A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data

DOI10.1016/J.COMPBIOLCHEM.2004.12.004zbMATH Open1095.92054OpenAlexW2997696222WikidataQ30981697 ScholiaQ30981697MaRDI QIDQ2500263FDOQ2500263

Authors: Yinglei Lai, Hongyu Zhao 

Publication date: 23 August 2006

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.compbiolchem.2004.12.004

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zbMATH Keywords

Comparative genomic hybridization (CGH)Single nucleotide polymorphism (SNP) array

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Medical applications (general) (92C50) Biochemistry, molecular biology (92C40)

Cites Work

• Title not available (Why is that?)
• Circular binary segmentation for the analysis of array-based DNA copy number data
• Hidden Markov models approach to the analysis of array CGH data
• A method for calling gains and losses in array CGH data
• Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection

Cited In (4)

• Title not available (Why is that?)
• The biases of copy numbers from affymetrix SNP arrays and their corrections
• Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays
• FDR control of detected regions by multiscale matched filtering

Uses Software

• CGH-Plotter

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