A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data

DOI10.1016/J.COMPBIOLCHEM.2004.12.004MaRDI QIDQ2500263zbMATH OpenOpenAlexWikidataFDO

Authors Yinglei Lai, Hongyu Zhao

Publication date 23 August 2006

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.compbiolchem.2004.12.004

zbMATH Keywords

Comparative genomic hybridization (CGH)Single nucleotide polymorphism (SNP) array

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Medical applications (general) (92C50) Biochemistry, molecular biology (92C40)

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Cites work

• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• A method for calling gains and losses in array CGH data
• Circular binary segmentation for the analysis of array-based DNA copy number data
• Hidden Markov models approach to the analysis of array CGH data
• Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection

Cited in

(4)

• Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays
• scientific article; zbMATH DE number 1961977 (Why is no real title available?)
• FDR control of detected regions by multiscale matched filtering
• The biases of copy numbers from affymetrix SNP arrays and their corrections

Describes a project that uses

Uses Software

• CGH-Plotter

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