FastLSA: A fast, linear-space, parallel and sequential algorithm for sequence alignment

DOI10.1007/S00453-006-1217-YzbMath1097.68673OpenAlexW2139596748MaRDI QIDQ2502285

Kevin Charter, Jonathan Schaeffer, Adrian Driga, Duane Szafron, Paul Lu, I. D. Parsons

Publication date: 12 September 2006

Published in: Algorithmica (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00453-006-1217-y

zbMATH Keywords

homology search

Mathematics Subject Classification ID

Analysis of algorithms (68W40) Parallel algorithms in computer science (68W10) Protein sequences, DNA sequences (92D20)

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A parallel strategy for biological sequence alignment in restricted memory space

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