A novel Lie algebra of the genetic code over the Galois field of four DNA bases

DOI10.1016/J.MBS.2006.03.017MaRDI QIDQ2506745zbMATH OpenOpenAlexWikidataFDO

Authors Robersy Sánchez, Ricardo Grau, Eberto R. Morgado

Publication date 10 October 2006

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/q-bio/0501036

zbMATH Keywords

gene mutationgenetic code algebragenetic code Lie algebragenetic code vector spacetables

Mathematics Subject Classification ID

Lie algebras and Lie superalgebras (17B99) Genetic algebras (17D92) Biochemistry, molecular biology (92C40)

Abstract: By starting from the four DNA bases order in the Boolean lattice, a novel Lie Algebra of the genetic code is proposed. Here, the principal partitions of the genetic code table were obtained as equivalent classes of quotient subspaces of the genetic code vector space over the Galois field of the four DNA bases. The new algebraic structure shows strong connections among algebraic relationships, codon assignment and physicochemical properties of amino acids. Moreover, a distance function defined between codons in the Lie algebra was demonstrated to have a linear behavior respect to physical variables such as the mean of amino acids energy in proteins. It was also noticed that the distance between wild type and mutant codons approach smaller values in mutational variants of four genes, i.e, human phenylalanine hydroxylase, human beta-globin, HIV-1 protease and HIV-1 reverse transcriptase. These results strongly suggest that deterministic rules in genetic code origin must be involved.

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Cites work

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• EQ-algebras based on hyper EQ-algebras
• The impracticalities of multiplicatively-closed codon models: a retreat to linear alternatives
• EQ-algebras based on fuzzy hyper EQ-filters
• Gene algebra from a genetic code algebraic structure
• Varieties of null-filiform Leibniz algebras under the action of Hopf algebras
• A Lie algebra approach on maximal self complementary C^3-codes
• Some algebraic aspects and evolution of genetic code
• Algebraic methods in mathematical biology
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• Genetic Hotels for the standard genetic code: evolutionary analysis based upon novel three-dimensional algebraic models
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