Pattern identification and characterization reveal permutations of organs as a key genetically controlled property of post-meristematic phyllotaxis

DOI10.1016/J.JTBI.2013.07.026MaRDI QIDQ2632219zbMATH OpenOpenAlexWikidataFDO

Authors Yassin Refahi, Fabrice Besnard, Etienne Farcot, Christophe Godin, Teva Vernoux, Yann Guédon

Publication date 14 May 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2013.07.026

zbMATH Keywords

hidden Markov modelmixture modelcombinatorial modelplant phenotypingvariable-order Markov chain

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Developmental biology, pattern formation (92C15) Plant biology (92C80)

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Cites work

• scientific article; zbMATH DE number 1375577 (Why is no real title available?)
• scientific article; zbMATH DE number 48186 (Why is no real title available?)
• scientific article; zbMATH DE number 484156 (Why is no real title available?)
• scientific article; zbMATH DE number 3443655 (Why is no real title available?)
• A Combinatorial Model of Phyllotaxis Perturbations in Arabidopsis thaliana
• A dynamical system for plant pattern formation: A rigorous analysis
• Analyzing growth components in trees
• Context tree estimation for not necessarily finite memory processes, via BIC and MDL
• Finite mixture models
• Hidden Markov Models for Time Series
• Hidden Markov processes
• Pattern theory. From representation to inference.
• Phyllotaxis
• Polygonal planforms and phyllotaxis on plants
• The EM Algorithm and Extensions, 2E
• Time-Series Forecasting

Cited in

(4)

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• The \textit{Arabidopsis thaliana} flower organ specification gene regulatory network determines a robust differentiation process
• Florigen distribution determined by a source-sink balance explains the diversity of inflorescence structures in \textit{Arabidopsis}
• SIMULATIONS OF TRANSITIONS FROM REGULAR TO STOCHASTIC PHYLLOTACTIC PATTERNS

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