Molecular motor traffic with a slow binding site

DOI10.1016/J.JTBI.2021.110644MaRDI QIDQ2659923zbMATH OpenOpenAlexFDO

Authors G. M. Schütz

Publication date 29 March 2021

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2021.110644

zbMATH Keywords

exclusion processMarkov modelmolecular motorsslow site

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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Cites work

• Deterministic exclusion process with a stochastic defect: matrix-product ground states
• Diffusion and scattering of shocks in the partially asymmetric simple exclusion process
• Diffusion-annihilation in the presence of a driving field
• Exact solution of the totally asymmetric simple exclusion process: shock profiles
• Exactly solvable models for many-body systems far from equilibrium
• Finite-dimensional representations of the quadratic algebra: Applications to the exclusion process
• Generalized Bethe ansatz solution of a one-dimensional asymmetric exclusion process on a ring with blockage
• Microscopic structure of travelling waves in the asymmetric simple exclusion process
• On the phase transition in the sublattice TASEP with stochastic blockage
• Random walk of second class particles in product shock measures
• Relaxation spectrum of the asymmetric exclusion process with open boundaries
• RNA polymerase interactions and elongation rate
• Self-duality and shock dynamics in the n-species priority ASEP
• Synchronous asymmetric exclusion processes
• The asymmetric exclusion process: Comparison of update procedures
• The Heisenberg chain as a dynamical model for protein synthesis - some theoretical and experimental results
• Theoretical analysis of dynamic processes for interacting molecular motors
• Transition to shocks in TASEP and decoupling of last passage times
• Transport by molecular motors in the presence of static defects

Cited in

(5)

• Traffic of molecular motors through tube-like compartments
• Transport by molecular motors in the presence of static defects
• From CA to Gene Expression: Machines and Mechanisms
• Measuring the limping of processive motor proteins
• Defect-induced anticorrelations in molecular motor traffic

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