Analysis of single-cell data. ODE constrained mixture modeling and approximate Bayesian computation

DOI10.1007/978-3-658-13234-7MaRDI QIDQ2804242zbMATH OpenOpenAlexFDO

Authors Carolin Loos

Publication date 28 April 2016

Published in BestMasters (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-658-13234-7

zbMATH Keywords

approximate Bayesian computationcellular heterogeneitysingle-cell dataODE constrained mixture modeling

Mathematics Subject Classification ID

Bayesian inference (62F15) General biostatistics (92B15) Systems biology, networks (92C42) Introductory exposition (textbooks, tutorial papers, etc.) pertaining to biology (92-01) Computational methods for problems pertaining to biology (92-08) Cell biology (92C37) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cited in

(7)

• Kinetic Foundation of the Zero-Inflated Negative Binomial Model for Single-Cell RNA Sequencing Data
• Estimating Latent Cell Subpopulations with Bayesian Feature Allocation Models
• Detecting T cell activation using a varying dimension Bayesian model
• Single-cell multi-omic velocity infers dynamic and decoupled gene regulation
• SimBPDD: Simulating differential distributions in Beta-Poisson models, in particular for single-cell RNA sequencing data
• Distance-matrix-based extraction of motility features from functionally heterogeneous cell populations
• Cell-level pathway scoring comparison with a biologically constrained variational autoencoder

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