Progress in nuclear vector replacement for NMR protein structure-based assignments

DOI10.1051/RO/2015038MaRDI QIDQ2805494zbMATH OpenOpenAlexFDO

Authors Şeyma Çetnikaya, Şeyma Nur Ekren, Mehmet Serkan Apaydın

Publication date 11 May 2016

Published in RAIRO. Operations Research (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1051/ro/2015038

zbMATH Keywords

score functionNMR structure based protein assignmentNVRreliability of assignmentstriple resonance experiments

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Combinatorial optimization (90C27) Computational methods for problems pertaining to biology (92-08) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

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Cites work

• The orderly colored longest path problem -- a survey of applications and new algorithms

Cited in

(4)

• Developing a scoring function for NMR structure-based assignments using machine learning
• Recent advances in operations research in computational biology, bioinformatics and medicine
• NMR assignment through linear programming
• Research in Computational Molecular Biology

Describes a project that uses

Uses Software

• SHIFTX2
• SPARTA+

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