Progress in nuclear vector replacement for NMR protein structure-based assignments

DOI10.1051/RO/2015038zbMATH Open1336.90070OpenAlexW2307863992MaRDI QIDQ2805494FDOQ2805494

Authors: Şeyma Çetnikaya, Şeyma Nur Ekren, Mehmet Serkan Apaydın 

Publication date: 11 May 2016

Published in: RAIRO. Operations Research (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1051/ro/2015038

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zbMATH Keywords

score functionNMR structure based protein assignmentNVRreliability of assignmentstriple resonance experiments

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Combinatorial optimization (90C27) Computational methods for problems pertaining to biology (92-08) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Cites Work

• The orderly colored longest path problem -- a survey of applications and new algorithms

Cited In (4)

• Developing a scoring function for NMR structure-based assignments using machine learning
• NMR assignment through linear programming
• Research in Computational Molecular Biology
• Recent advances in operations research in computational biology, bioinformatics and medicine

Uses Software

• SHIFTX2
• SPARTA+

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