Fluctuating Hydrodynamics Methods for Dynamic Coarse-Grained Implicit-Solvent Simulations in LAMMPS

DOI10.1137/15M1026390zbMath1364.65172OpenAlexW2541702997MaRDI QIDQ2830581

Y. Zhang, Jon K. Sigurdsson, Paul J. Atzberger

Publication date: 28 October 2016

Published in: SIAM Journal on Scientific Computing (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1137/15m1026390

zbMATH Keywords

immersed boundary methodfluctuating hydrodynamicsimplicit solventcoarse-grainedsoft materialsstochastic eulerian Lagrangian method

Mathematics Subject Classification ID

Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06) Physiological flows (76Z05) Packaged methods for numerical algorithms (65Y15) Physiological flow (92C35)

Related Items (3)

Coarse-grained methods for heterogeneous vesicles with phase-separated domains: elastic mechanics of shape fluctuations, plate compression, and channel insertion ⋮ Hydrodynamic flows on curved surfaces: spectral numerical methods for radial manifold shapes ⋮ Stochastic discontinuous Galerkin methods (SDGM) based on fluctuation-dissipation balance

Uses Software

• LAMMPS
• Jython
• SELM

Cites Work

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