Precision and Sensitivity in Detailed-Balance Reaction Networks

DOI10.1137/15M1054869zbMath1350.92064arXiv1601.00108OpenAlexW2964259505MaRDI QIDQ2832989

Saeed Masroor, Rudi A. Pendavingh, Tom de Greef, Mark Adriaan Peletier

Publication date: 16 November 2016

Published in: SIAM Journal on Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1601.00108

zbMATH Keywords

dissipationmatroidreaction networksensory adaptation

Mathematics Subject Classification ID

Classical flows, reactions, etc. in chemistry (92E20) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Chemical kinetics in thermodynamics and heat transfer (80A30)

Cites Work

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• A gradient structure for systems coupling reaction-diffusion effects in bulk and interfaces
• Thermodynamic constraints for biochemical networks
• Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes
• Modeling of chemical reaction systems with detailed balance using gradient structures
• Thermodynamic limits to information harvesting by sensory systems
• Irreversibility and Heat Generation in the Computing Process
• The potential and flux landscape, Lyapunov function and non-equilibrium thermodynamics for dynamic systems and networks with an application to signal-induced Ca²⁺oscillation
• Algorithms and Computation
• On the Complexity of Some Enumeration Problems for Matroids