How conformational dynamics influences the protein search for targets on DNA

DOI10.1088/1751-8113/49/44/444004MaRDI QIDQ2834808zbMATH OpenOpenAlexFDO

Authors Maria P. Kochugaeva, Alexey A. Shvets, Anatoly B. Kolomeisky

Publication date 24 November 2016

Published in Journal of Physics A: Mathematical and Theoretical (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1088/1751-8113/49/44/444004

zbMATH Keywords

discrete-state stochastic modelsfacilitated diffusionfirst-passage processesprotein search

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Recommendations

• Target search of a protein on DNA in the presence of position-dependent bias
• A theoretical study of the role of bulk crowders on target search dynamics of DNA binding proteins
• SEARCHING FOR TARGETS ON A MODEL DNA: EFFECTS OF INTER-SEGMENT HOPPING, DETACHMENT, AND RE-ATTACHMENT
• Protein-DNA recognition: breaking the combinatorial barrier
• Characterizing DNA bond shapes using trajectories

Cited in

(8)

• Transcriptional protein-protein cooperativity in POU/HMG/DNA complexes revealed by normal mode analysis
• On the ion-mediated interaction between protein and DNA
• SEARCHING FOR TARGETS ON A MODEL DNA: EFFECTS OF INTER-SEGMENT HOPPING, DETACHMENT, AND RE-ATTACHMENT
• How a protein searches for its site on DNA: the mechanism of facilitated diffusion
• Preface: Marian Smoluchowski's 1916 paper -- a century of inspiration
• Target search of a protein on DNA in the presence of position-dependent bias
• A theoretical study of the role of bulk crowders on target search dynamics of DNA binding proteins
• Protein-DNA recognition: breaking the combinatorial barrier

This page was built for publication: How conformational dynamics influences the protein search for targets on DNA

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2834808)