Minimum mosaic inference of a set of recombinants

DOI10.1142/S0129054113400042MaRDI QIDQ2841985zbMATH OpenFDO

Authors Guillaume Blin, Romeo Rizzi, Florian Sikora, Stéphane Vialette

Publication date 30 July 2013

Published in International Journal of Foundations of Computer Science (Search for Journal in Brave)

zbMATH Keywords

complexitySNPhaplotype

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15) Computational methods for problems pertaining to biology (92-08)

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Cites work

• Haplotyping populations by pure parsimony: complexity of exact and approximation algorithms
• Large neighbourhood search algorithms for the founder sequence reconstruction problem
• Reconstructing a history of recombinations from a set of sequences

Cited in

(10)

• scientific article; zbMATH DE number 1945170 (Why is no real title available?)
• Minimum segmentation for pan-genomic founder reconstruction in linear time
• Constructing founder sets under allelic and non-allelic homologous recombination
• Large neighbourhood search algorithms for the founder sequence reconstruction problem
• Research in Computational Molecular Biology
• Bounds on the minimum mosaic of population sequences under recombination
• Two strikes against the phage recombination problem
• Improved Algorithms for Inferring the Minimum Mosaic of a Set of Recombinants
• Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction
• Linear time maximum segmentation problems in column stream model

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