Extending the metabolic network of Ectocarpus siliculosus using answer set programming

DOI10.1007/978-3-642-40564-8_25zbMATH Open1405.68046DBLPconf/lpnmr/ColletEGPSST13OpenAlexW122202356WikidataQ56755019 ScholiaQ56755019MaRDI QIDQ2851257FDOQ2851257

Authors: Guillaume Collet, Damien Eveillard, Martin Gebser, Sylvain Prigent, Torsten Schaub, Anne Siegel, Sven Thiele 

Publication date: 10 October 2013

Published in: Logic Programming and Nonmonotonic Reasoning (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-642-40564-8_25

Recommendations

• Automatic network reconstruction using ASP
• Hybrid metabolic network completion
• Hybrid metabolic network completion
• Metabolic networks are NP-hard to reconstruct
• Modeling biological networks by action languages via answer set programming

Mathematics Subject Classification ID

Systems biology, networks (92C42) Knowledge representation (68T30) Logic programming (68N17)

Cited In (3)

• Automatic network reconstruction using ASP
• Hybrid metabolic network completion
• Learning Boolean logic models of signaling networks with ASP

Uses Software

• Gringo
• clasp
• Clingo

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