Estimating the transmission dynamics of \textit{Streptococcus pneumoniae} from strain prevalence data

DOI10.1111/BIOM.12040MaRDI QIDQ2861971zbMATH OpenOpenAlexWikidataFDO

Authors Elina Numminen, Lu Cheng, Mats Gyllenberg, Jukka Corander

Publication date 13 November 2013

Published in Biometrics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/biom.12040

zbMATH Keywords

Bayesian inferencecontinuous-time Markov chainsepidemiologymulti-strain modelstransmission dynamics

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Monte Carlo methods (65C05) Epidemiology (92D30)

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Cites work

• A stochastic model for head lice infections
• Epidemics with two levels of mixing
• Sequential Monte Carlo without likelihoods

Cited in

(16)

• Likelihood-free inference via classification
• Efficient acquisition rules for model-based approximate Bayesian computation
• Adaptive approximate Bayesian computation tolerance selection
• Bayesian inference for multistrain epidemics with application to \textit{Escherichia coli} O157:H7 in feedlot cattle
• A mathematical model for the spread of \textit{Streptococcus pneumoniae} with transmission due to sequence type
• How direct competition shapes coexistence and vaccine effects in multi-strain pathogen systems
• Transmission of Pneumococcal Carriage in Families: A Latent Markov Process Model for Binary Longitudinal Data
• Gaussian process emulators for spatial individual-level models of infectious disease
• Mathematical assessment of the impact of cohort vaccination on pneumococcal carriage and serotype replacement
• On predictive inference for intractable models via approximate Bayesian computation
• Sequential Bayesian experimental design for implicit models via mutual information
• Pneumococcus and the stress-gradient hypothesis: a trade-off links R₀ and susceptibility to co-colonization across countries
• Incorporating contact network uncertainty in individual level models of infectious disease using approximate Bayesian computation
• Misspecification-robust likelihood-free inference in high dimensions
• Stratified distance space improves the efficiency of sequential samplers for approximate Bayesian computation
• Conditional density estimation using population Monte Carlo based approximate Bayesian computation

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