Estimating the transmission dynamics of \textit{Streptococcus pneumoniae} from strain prevalence data

DOI10.1111/BIOM.12040MaRDI QIDQ2861971zbMATH OpenOpenAlexWikidataFDO

Authors Elina Numminen, Lu Cheng, Mats Gyllenberg, Jukka Corander

Publication date 13 November 2013

Published in Biometrics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/biom.12040

zbMATH Keywords

Bayesian inferenceepidemiologycontinuous-time Markov chainstransmission dynamicsmulti-strain models

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Monte Carlo methods (65C05) Epidemiology (92D30)

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Cites work

• A stochastic model for head lice infections
• Epidemics with two levels of mixing
• Sequential Monte Carlo without likelihoods

Cited in

(13)

• Transmission of Pneumococcal Carriage in Families: A Latent Markov Process Model for Binary Longitudinal Data
• Likelihood-free inference via classification
• Bayesian inference for multistrain epidemics with application to \textit{Escherichia coli} O157:H7 in feedlot cattle
• Adaptive approximate Bayesian computation tolerance selection
• Efficient acquisition rules for model-based approximate Bayesian computation
• How direct competition shapes coexistence and vaccine effects in multi-strain pathogen systems
• Sequential Bayesian experimental design for implicit models via mutual information
• Incorporating contact network uncertainty in individual level models of infectious disease using approximate Bayesian computation
• Gaussian process emulators for spatial individual-level models of infectious disease
• Pneumococcus and the stress-gradient hypothesis: a trade-off links \(R_0\) and susceptibility to co-colonization across countries
• On predictive inference for intractable models via approximate Bayesian computation
• Mathematical assessment of the impact of cohort vaccination on pneumococcal carriage and serotype replacement
• A mathematical model for the spread of \textit{Streptococcus pneumoniae} with transmission due to sequence type

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