An exact mathematical programming approach to multiple RNA sequence-structure alignment

MaRDI QIDQ2867347zbMATH OpenFDO

Authors Markus J. Bauer, Gunnar W. Klau, Knut Reinert

Publication date 11 December 2013

Published in Algorithmic Operations Research (Search for Journal in Brave)

Full work available at URL http://journals.hil.unb.ca/index.php/AOR/article/view/9700

zbMATH Keywords

mathematical programmingRNA sequence structure alignment

Mathematics Subject Classification ID

Permutations, words, matrices (05A05) Protein sequences, DNA sequences (92D20) Combinatorial optimization (90C27)

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Cited in

(8)

• Forest alignment with affine gaps and anchors, applied in RNA structure comparison
• Detecting conserved secondary structures in RNA molecules using constrained structural alignment
• Integer Linear Programming in Computational Biology
• Combinatorial Pattern Matching
• Algorithms and Computation
• Computational Science - ICCS 2004
• Computing and Combinatorics
• A computational model for RNA multiple structural alignment

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