An exact mathematical programming approach to multiple RNA sequence-structure alignment

zbMATH Open1277.90107MaRDI QIDQ2867347FDOQ2867347

Authors: Markus J. Bauer, Gunnar W. Klau, Knut Reinert 

Publication date: 11 December 2013

Published in: Algorithmic Operations Research (Search for Journal in Brave)

Full work available at URL: http://journals.hil.unb.ca/index.php/AOR/article/view/9700

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zbMATH Keywords

mathematical programmingRNA sequence structure alignment

Mathematics Subject Classification ID

Permutations, words, matrices (05A05) Protein sequences, DNA sequences (92D20) Combinatorial optimization (90C27)

Cited In (8)

• Forest alignment with affine gaps and anchors, applied in RNA structure comparison
• Integer Linear Programming in Computational Biology
• Detecting conserved secondary structures in RNA molecules using constrained structural alignment
• Combinatorial Pattern Matching
• Algorithms and Computation
• Computational Science - ICCS 2004
• Computing and Combinatorics
• A computational model for RNA multiple structural alignment

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