PARALLEL ALGORITHMS FOR MAPPING SHORT DEGENERATE AND WEIGHTED DNA SEQUENCES TO A REFERENCE GENOME

DOI10.1142/S0129054112400114zbMath1250.92019MaRDI QIDQ2909194

Mirka Miller, Costas S. Iliopoulos, Solon P. Pissis

Publication date: 30 August 2012

Published in: International Journal of Foundations of Computer Science (Search for Journal in Brave)

zbMATH Keywords

string algorithms; next-generation sequencing

Mathematics Subject Classification ID

92C50: Medical applications (general)

92C40: Biochemistry, molecular biology

68W10: Parallel algorithms in computer science

65Y05: Parallel numerical computation

68W32: Algorithms on strings