Sparse Markov chains for sequence data

DOI10.1111/SJOS.12053zbMATH Open1309.62053OpenAlexW1520077809MaRDI QIDQ2922158FDOQ2922158

Timo Koski, Jie Xiong, Jukka Corander, Väinö Jääskinen

Publication date: 9 October 2014

Published in: Scandinavian Journal of Statistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1111/sjos.12053

Mathematics Subject Classification ID

Bayesian inference (62F15) Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Inference from stochastic processes and prediction (62M20) Markov chains (discrete-time Markov processes on discrete state spaces) (60J10)

Cites Work

• Title not available (Why is that?)
• Context tree estimation for not necessarily finite memory processes, via BIC and MDL
• Optional Pólya tree and Bayesian inference
• Bayesian analysis of variable-order, reversible Markov chains
• The consistency of the BIC Markov order estimator.
• Hidden Markov models for bioinformatics
• A universal data compression system
• The context-tree weighting method: basic properties
• Variable length Markov chains
• Hidden Markov partition models
• A universal finite memory source
• Clustering gene expression data using a posterior split-merge-birth procedure

Cited In (6)

• Estimation and Selection for High-Order Markov Chains with Bayesian Mixture Transition Distribution Models
• Fitting sparse Markov models through a collapsed Gibbs sampler
• Distributions of pattern statistics in sparse Markov models
• Computation of exact probabilities associated with overlapping pattern occurrences
• Context-Specific and Local Independence in Markovian Dependence Structures
• Recursive learning for sparse Markov models

Recommendations

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• Recursive learning for sparse Markov models 👍 👎
• Efficient sequential estimation in finite-state markov processes 👍 👎
• Fast computation of stationary joint probability distribution of sparse Markov chains 👍 👎
• Structured priors for sparse probability vectors with application to model selection in Markov chains 👍 👎

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