Inferring gene duplications, transfers and losses can be done in a discrete framework

DOI10.1007/S00285-015-0930-ZMaRDI QIDQ292678zbMATH OpenOpenAlexWikidataFDO

Authors Celine Scornavacca, Jean-Philippe Doyon, Vincent Berry, Vincent Ranwez

Publication date 8 June 2016

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00285-015-0930-z

zbMATH Keywords

equivalencegene evolutionparsimonyphylogeneticstree embeddingtree reconciliation

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

• Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations
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Cites work

• H-trees: a model of evolutionary scenarios with horizontal gene transfer
• Inferring evolutionary scenarios in the duplication, loss and horizontal gene transfer model
• Jungles: A new solution to the host/parasite phylogeny reconciliation problem

Cited in

(5)

• Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations
• Reconciliation with segmental duplication, transfer, loss and gain
• Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models
• Aligning and Labeling Genomes under the Duplication-Loss Model
• Exploring the space of gene/species reconciliations with transfers

Describes a project that uses

Uses Software

• SylvX
• Jane

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