Symmetry structure in discrete models of biochemical systems: natural subsystems and the weak control hierarchy in a new model of computation driven by interactions

DOI10.1098/RSTA.2014.0223MaRDI QIDQ2955779zbMATH OpenOpenAlexWikidataFDO

Authors Chrystopher L. Nehaniv, Attila Egri-Nagy, P. Dini, Eric Rothstein Morris, Gábor Horváth, Fariba Karimi, Daniel Schreckling, Maria Schilstra, John L. Rhodes

Publication date 13 January 2017

Published in Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL http://hdl.handle.net/2299/16489

zbMATH Keywords

regulatory systemsweak controlfinite discrete automatapools of reversibility

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Cellular automata (computational aspects) (68Q80)

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Cites work

• scientific article; zbMATH DE number 3885321 (Why is no real title available?)
• scientific article; zbMATH DE number 4012495 (Why is no real title available?)
• scientific article; zbMATH DE number 3654376 (Why is no real title available?)
• scientific article; zbMATH DE number 3770955 (Why is no real title available?)
• scientific article; zbMATH DE number 3561239 (Why is no real title available?)
• scientific article; zbMATH DE number 3566657 (Why is no real title available?)
• scientific article; zbMATH DE number 3595234 (Why is no real title available?)
• scientific article; zbMATH DE number 1296290 (Why is no real title available?)
• Algebraic Theory of Automata Networks
• An assertion concerning functionally complete algebras and NP-completeness
• BioAmbients: an abstraction for biological compartments
• Bounded-width polynomial-size branching programs recognize exactly those languages in \(NC^ 1\)
• Cascade synthesis of finite-state machines
• Chemical organisation theory
• Equivalence and equation solvability problems for the alternating group \(\mathbf A_4\).
• On straight words and minimal permutators in finite transformation semigroups
• Petri net modelling of biological regulatory networks
• Realization is universal
• Realizing complex boolean functions with simple groups
• SgpDec: cascade (de)compositions of finite transformation semigroups and permutation groups
• Short polynomial representations for square roots modulo p
• The Near-Ring Generated by the Inner Automorphisms of a Finite Simple Group
• The \(\mathfrak q\)-theory of finite semigroups.
• The arithmetic of polynomial maps over a group and the structure of certain permutational polynomial groups. I
• The extended equivalence and equation solvability problems for groups
• The real numbers as a wreath product
• Theory of finite simple groups.
• Unification in primal algebras, their powers and their varieties
• Universal coalgebra: A theory of systems

Cited in

(4)

• Symmetry principles via interactions and symmetry-violations.
• BIOMICS: a Theory of Interaction Computing
• From relation to emulation and interpretation: computer algebra implementation of the covering lemma for finite transformation semigroups
• Philosophy of Computation

Describes a project that uses

Uses Software

• BioAmbient Machine
• SgpDec

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