Crowding and hopping in a protein's diffusive transport on DNA

DOI10.1088/1751-8121/AA53EEMaRDI QIDQ2969683zbMATH OpenOpenAlexFDO

Authors Elena F. Koslover, Mario Díaz de la Rosa, Andrew J. Spakowitz

Publication date 22 March 2017

Published in Journal of Physics A: Mathematical and Theoretical (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1088/1751-8121/aa53ee

zbMATH Keywords

diffusiongene regulationprotein-DNA interactions

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Transport processes in time-dependent statistical mechanics (82C70)

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Cites work

• Analysis of a one-dimensional random walk with irreversible losses at each step: applications for protein movement on DNA
• The random walk's guide to anomalous diffusion: A fractional dynamics approach

Cited in

(9)

• Preface: Marian Smoluchowski's 1916 paper -- a century of inspiration
• On the diffusion of alpha-helical proteins in solvents
• A theoretical study of the role of bulk crowders on target search dynamics of DNA binding proteins
• On the Hydrodynamic Diffusion of Rigid Particles of Arbitrary Shape with Application to DNA
• Physical modeling of the spreading of epigenetic modifications through transient DNA looping
• Protein diffusion along DNA: on the effect of roadblocks and crowders
• Time and space generalized diffusion equation on graph/networks
• Analysis of a one-dimensional random walk with irreversible losses at each step: applications for protein movement on DNA
• Transcription factor target site search and gene regulation in a background of unspecific binding sites

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