Crowding and hopping in a protein's diffusive transport on DNA

DOI10.1088/1751-8121/AA53EEzbMATH Open1358.92042OpenAlexW2562632357MaRDI QIDQ2969683FDOQ2969683

Authors: Elena F. Koslover, Mario Díaz de la Rosa, Andrew J. Spakowitz 

Publication date: 22 March 2017

Published in: Journal of Physics A: Mathematical and Theoretical (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1088/1751-8121/aa53ee

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zbMATH Keywords

diffusiongene regulationprotein-DNA interactions

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Transport processes in time-dependent statistical mechanics (82C70)

Cites Work

• The random walk's guide to anomalous diffusion: A fractional dynamics approach
• Analysis of a one-dimensional random walk with irreversible losses at each step: applications for protein movement on DNA

Cited In (9)

• Preface: Marian Smoluchowski's 1916 paper -- a century of inspiration
• On the diffusion of alpha-helical proteins in solvents
• A theoretical study of the role of bulk crowders on target search dynamics of DNA binding proteins
• On the Hydrodynamic Diffusion of Rigid Particles of Arbitrary Shape with Application to DNA
• Physical modeling of the spreading of epigenetic modifications through transient DNA looping
• Protein diffusion along DNA: on the effect of roadblocks and crowders
• Time and space generalized diffusion equation on graph/networks
• Analysis of a one-dimensional random walk with irreversible losses at each step: applications for protein movement on DNA
• Transcription factor target site search and gene regulation in a background of unspecific binding sites

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