Testing differentially expressed genes in dose-response studies and with ordinal phenotypes

DOI10.1515/SAGMB-2015-0091MaRDI QIDQ306649zbMATHOpenAlexWikidataFDO

Authors Jan Gertheiss, Elizabeth Sweeney, Ciprian M. Crainiceanu

Publication date 1 September 2016

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1515/sagmb-2015-0091

zbMATH Keywords

ANOVAmixed modelsmicroarray datanon-monotonic dose-response curvesnon-parametric dose-response analysis

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) General biostatistics (92B15) Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 193111 (Why is no real title available?)
• scientific article; zbMATH DE number 3530798 (Why is no real title available?)
• scientific article; zbMATH DE number 3333862 (Why is no real title available?)
• scientific article; zbMATH DE number 3390139 (Why is no real title available?)
• ANOVA for factors with ordered levels
• Exact likelihood ratio tests for penalised splines
• Fast Stable Restricted Maximum Likelihood and Marginal Likelihood Estimation of Semiparametric Generalized Linear Models
• Likelihood Ratio Testing of Variance Components in the Linear Mixed-Effects Model Using Restricted Maximum Likelihood
• Likelihood Ratio Tests in Linear Mixed Models with One Variance Component
• Maximum Likelihood Approaches to Variance Component Estimation and to Related Problems
• Model-based boosting 2.0
• Ordered tests in the analysis of variance
• Rating scales as predictors -- the old question of scale level and some answers
• Semiparametric Regression
• Size and power of tests for a zero random effect variance or polynomial regression in additive and linear mixed models
• Testing for Trends in Dose-Response Microarray Experiments: A Comparison of Several Testing Procedures, Multiplicity and Resampling-Based Inference
• Testing linearity and relevance of ordinal predictors
• Uncertainty Modeling in Dose Response

Cited in

(1)

• Testing for Trends in Dose-Response Microarray Experiments: A Comparison of Several Testing Procedures, Multiplicity and Resampling-Based Inference

Describes a project that uses

Uses Software

• R
• RLRsim
• SemiPar
• mboost
• ORIOGEN
• ordPens
• IsoGene

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