DNA, knots and tangles

DOI10.1007/978-3-642-15637-3_11MaRDI QIDQ3078618zbMATH OpenOpenAlexFDO

Authors De Witt L. Sumners

Publication date 28 February 2011

Published in The Mathematics of Knots (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-642-15637-3_11

zbMATH Keywords

4-platsDNA knotsDNA supercoilingDNA TopologyKnot theorylinking numbermolecular biologyrational tanglessite-specific recombinationtangle modeltopoisomerase

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

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• Tangle analysis of Gin site-specific recombination
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• Introduction to DNA topology
• Reactions mediated by topoisomerases and other enzymes: modelling localised DNA transformations
• A topological model of site-specific recombination that predicts the knot and link type of DNA products
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• DNA and the SU(3) invariant of knots and links
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• Modeling repulsive forces on fibres via knot energies
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• DNA topology review
• On the heuristic power of mathematical representations
• Modeling protein-DNA complexes with tangles

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