DNA, knots and tangles

DOI10.1007/978-3-642-15637-3_11MaRDI QIDQ3078618zbMATHOpenAlexFDO

Authors De Witt L. Sumners

Publication date 28 February 2011

Published in The Mathematics of Knots (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-642-15637-3_11

zbMATH Keywords

rational tangleslinking numbermolecular biology4-platstangle modelDNA supercoilingsite-specific recombinationtopoisomeraseKnot theoryDNA knotsDNA Topology

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

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(23)

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• Modeling repulsive forces on fibres via knot energies
• Topological analysis of enzymatic actions on DNA polyhedral links
• DNA and the SU(3) invariant of knots and links
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• A mathematical model for enzymatic action on DNA knots and links
• Reactions mediated by topoisomerases and other enzymes: modelling localised DNA transformations
• Introduction to DNA topology
• scientific article; zbMATH DE number 4055433 (Why is no real title available?)
• Tangle analysis of Gin site-specific recombination
• Distributions of knots and links in circular DNA
• A topological model of site-specific recombination that predicts the knot and link type of DNA products
• DNA topology review
• scientific article; zbMATH DE number 1735644 (Why is no real title available?)
• Modeling repulsive forces on fibres via knot energies
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• Modeling protein-DNA complexes with tangles
• Tops and writhing DNA

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