Stabilized finite element methods to simulate the conductances of ion channels
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Publication:310833
DOI10.1016/J.CPC.2014.11.018zbMATH Open1344.92060OpenAlexW1999177584MaRDI QIDQ310833FDOQ310833
Authors: Bin Tu, Yan Xie, Linbo Zhang, Benzhuo Lu 
Publication date: 8 September 2016
Published in: Computer Physics Communications (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.cpc.2014.11.018
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Biochemistry, molecular biology (92C40) PDEs in connection with biology, chemistry and other natural sciences (35Q92) Finite element, Rayleigh-Ritz and Galerkin methods for initial value and initial-boundary value problems involving PDEs (65M60)
Cites Work
- Streamline upwind/Petrov-Galerkin formulations for convection dominated flows with particular emphasis on the incompressible Navier-Stokes equations
- Stabilized mixed methods for the Stokes problem
- A new finite element formulation for computational fluid dynamics. III: The generalized streamline operator for multidimensional advective- diffusive systems
- Residual-free bubbles for advection-diffusion problems: The general error analysis
- Finite element methods for linear hyperbolic problems
- Comparison of some finite element methods for solving the diffusion-convection-reaction equation
- Parallel adaptive finite element algorithms for solving the coupled electro-diffusion equations
- A new finite element formulation for computational fluid dynamics. II. Beyond SUPG
- Finite element methods for first-order hyperbolic systems with particular emphasis on the compressible Euler equations
- Stabilized finite element methods. I.: Application to the advective- diffusive model
- Applications of the pseudo residual-free bubbles to the stabilization of convection-diffusion problems
- On the choice of a stabilizing subgrid for convection-diffusion problems
- A unified approach to compressible and incompressible flows
- A comparative study of different sets of variables for solving compressible and incompressible flows
- Stabilized finite element methods for the velocity-pressure-stress formulation of incompressible flows
- Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes. I: Finite element solutions
- Title not available (Why is that?)
- A bubble-stabilized finite element method for Dirichlet constraints on embedded interfaces
- A stabilized finite element method for modified Poisson-Nernst-Planck equations to determine ion flow through a nanopore
- Numerical multiscale methods
- Second-order Poisson-Nernst-Planck solver for ion transport
- Two- and three-dimensional Poisson--Nernst--Planck simulations of current flow through gramicidin A
- A multigrid method for the Poisson-Nernst-Planck equations
- A new finite element formulation for computational fluid dynamics. VIII. The Galerkin/least-squares method for advective-diffusive equations
Cited In (12)
- A stabilized finite element method for the Poisson-Nernst-Planck equations in three-dimensional ion channel simulations
- A new block preconditioner and improved finite element solver of Poisson-Nernst-Planck equation
- Model reduction-based initialization methods for solving the Poisson-Nernst-Planck equations in three-dimensional ion channel simulations
- Efficient generation of membrane and solvent tetrahedral meshes for ion channel finite element calculation
- 3-D FE particle based model of ion transport across ionic channels
- A structure-preserving finite element discretization for the time-dependent Nernst-Planck equation
- An inverse averaging finite element method for solving the size-modified Poisson-Nernst-Planck equations in ion channel simulations
- An Effective Finite Element Iterative Solver for a Poisson--Nernst--Planck Ion Channel Model with Periodic Boundary Conditions
- Finite element model of charge transport across ionic channels
- Adaptive finite element approximation for steady-state Poisson-Nernst-Planck equations
- A Poisson-Nernst-Planck single ion channel model and its effective finite element solver
- A finite element iterative solver for a PNP ion channel model with Neumann boundary condition and membrane surface charge
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