MCMC using Hamiltonian dynamics
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Publication:3172405
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- Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis
- Markov chain Monte Carlo and irreversibility
- Partial derivatives for the first-passage time distribution in Wiener diffusion models
- Neuronal spike train analysis using Gaussian process models
- Hierarchical Poisson models for spatial count data
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- Stochastic gradient Markov chain Monte Carlo
- The free action of nonequilibrium dynamics
- Split Hamiltonian Monte Carlo
- Ensemble preconditioning for Markov chain Monte Carlo simulation
- Piecewise deterministic Markov processes for continuous-time Monte Carlo
- Bayesian inference for multistrain epidemics with application to \textit{Escherichia coli} O157:H7 in feedlot cattle
- Optimal Bayesian smoothing of functional observations over a large graph
- Merging MCMC subposteriors through Gaussian-process approximations
- Variational Hamiltonian Monte Carlo via score matching
- Adaptive schemes for piecewise deterministic Monte Carlo algorithms
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- Non-reversible Metropolis-Hastings
- Inducing wavelets into random fields via generative boosting
- Entropy-SGD: biasing gradient descent into wide valleys
- A function space HMC algorithm with second order Langevin diffusion limit
- Parameter estimation in stochastic differential equations with Markov chain Monte Carlo and non-linear Kalman filtering
- Gaussian process hyper-parameter estimation using parallel asymptotically independent Markov sampling
- Do items order? The psychology in IRT models
- Variational inference with NoFAS: normalizing flow with adaptive surrogate for computationally expensive models
- Couplings and quantitative contraction rates for Langevin dynamics
- Non-reversible guided Metropolis kernel
- Uncertainty quantification in scientific machine learning: methods, metrics, and comparisons
- Vecchia-Laplace approximations of generalized Gaussian processes for big non-Gaussian spatial data
- Hybrid nested sampling algorithm for Bayesian model selection applied to inverse subsurface flow problems
- Bayesian models for spatial count data with informative finite populations with application to the American community survey
- Deep Surrogate Accelerated Delayed-Acceptance Hamiltonian Monte Carlo for Bayesian Inference of Spatio-Temporal Heat Fluxes in Rotating Disc Systems
- Copula multivariate GARCH model with constrained Hamiltonian Monte Carlo
- Full Bayesian inference in hidden Markov models of plant growth
- Some things we've learned (about Markov chain Monte Carlo)
- Hilbert space methods for reduced-rank Gaussian process regression
- Direct likelihood-based inference for discretely observed stochastic compartmental models of infectious disease
- Laplacian smoothing stochastic gradient Markov chain Monte Carlo
- Geostatistical Methods for Disease Mapping and Visualisation Using Data from Spatio‐temporally Referenced Prevalence Surveys
- Leave Pima Indians alone: binary regression as a benchmark for Bayesian computation
- Inference of a mesoscopic population model from population spike trains
- GRIMS
- Triple point of a scalar field theory on a fuzzy sphere
- Two-scale coupling for preconditioned Hamiltonian Monte Carlo in infinite dimensions
- Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
- Certified dimension reduction in nonlinear Bayesian inverse problems
- Riemann manifold Langevin and Hamiltonian Monte Carlo methods. With discussion and authors' reply
- Bayesian functional joint models for multivariate longitudinal and time-to-event data
- Extra chance generalized hybrid Monte Carlo
- Generalized darting Monte Carlo
- On the use of Cauchy prior distributions for Bayesian logistic regression
- Estimating heterogeneous gene regulatory networks from zero-inflated single-cell expression data
- Modified Hamiltonian Monte Carlo for Bayesian inference
- Randomized Hamiltonian Monte Carlo
- A mathematical model for the dynamics and MCMC analysis of tomato bacterial wilt disease
- Emulation of higher-order tensors in manifold Monte Carlo methods for Bayesian inverse problems
- On Irreversible Metropolis Sampling Related to Langevin Dynamics
- Symplectic Gaussian process regression of maps in Hamiltonian systems
- Fast inference in generalized linear models via expected log-likelihoods
- A hybrid scan Gibbs sampler for Bayesian models with latent variables
- MCMC-driven importance samplers
- The no-U-turn sampler: adaptively setting path lengths in Hamiltonian Monte Carlo
- Hamiltonian Monte Carlo acceleration using surrogate functions with random bases
- MCMC methods for functions: modifying old algorithms to make them faster
- f-SAEM: a fast stochastic approximation of the EM algorithm for nonlinear mixed effects models
- Iterative importance sampling algorithms for parameter estimation
- Robust beta regression modeling with errors-in-variables: a Bayesian approach and numerical applications
- Comparison of Bayesian nonparametric density estimation methods
- Mode jumping MCMC for Bayesian variable selection in GLMM
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- Markov chain Monte Carlo and numerical differential equations
- Mixing rates for Hamiltonian Monte Carlo algorithms in finite and infinite dimensions
- Coordinate sampler: a non-reversible Gibbs-like MCMC sampler
- Random orthogonal matrices and the Cayley transform
- Bayesian adaptation of chaos representations using variational inference and sampling on geodesics
- Seeing the invisible: digital holography
- Ensemble Kalman sampler: mean-field limit and convergence analysis
- Geodesic Lagrangian Monte Carlo over the space of positive definite matrices: with application to Bayesian spectral density estimation
- Monte Carlo Simulation on the Stiefel Manifold via Polar Expansion
- Ensemble slice sampling. Parallel, black-box and gradient-free inference for correlated \& multimodal distributions
- A Bayesian approach for zero-modified Skellam model with Hamiltonian MCMC
- A spatial mixed-effects regression model for electoral data
- Irreducibility and geometric ergodicity of Hamiltonian Monte Carlo
- A shared spatial model for multivariate extreme-valued binary data with non-random missingness
- Neural network gradient Hamiltonian Monte Carlo
- Mixing of Hamiltonian Monte Carlo on strongly log-concave distributions: continuous dynamics
- Considering discrepancy when calibrating a mechanistic electrophysiology model
- Robust joint modelling of longitudinal and survival data: Incorporating a time‐varying degrees‐of‐freedom parameter
- Is there an analog of Nesterov acceleration for gradient-based MCMC?
- Powered embarrassing parallel MCMC sampling in Bayesian inference, a weighted average intuition
- Contaminant transport forecasting in the subsurface using a Bayesian framework
- Time-varying auto-regressive models for count time-series
- Accelerating numerical simulation of continuous-time Boolean satisfiability solver using discrete gradient
- Spatial Bayesian latent factor regression modeling of coordinate-based meta-analysis data
- Bayesian non-parametric modeling for integro-difference equations
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