Acceleration of biomolecular dynamics simulations on the Earth Simulator

DOI10.1142/S0219876208001480MaRDI QIDQ3174499zbMATH OpenOpenAlexFDO

Authors Masaaki Suzuki, H. Okuda

Publication date 14 October 2011

Published in International Journal of Computational Methods (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1142/s0219876208001480

zbMATH Keywords

protein structure predictionreplica exchange method

Mathematics Subject Classification ID

Parallel numerical computation (65Y05) Biochemistry, molecular biology (92C40)

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Cites work

• A fast algorithm for particle simulations
• An Implementation of the Fast Multipole Method without Multipoles

Cited in

(1)

• Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model

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