Acceleration of biomolecular dynamics simulations on the Earth Simulator

DOI10.1142/S0219876208001480zbMATH Open1222.92032OpenAlexW1985436227MaRDI QIDQ3174499FDOQ3174499

Authors: Masaaki Suzuki, H. Okuda 

Publication date: 14 October 2011

Published in: International Journal of Computational Methods (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1142/s0219876208001480

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zbMATH Keywords

protein structure predictionreplica exchange method

Mathematics Subject Classification ID

Parallel numerical computation (65Y05) Biochemistry, molecular biology (92C40)

Cites Work

• A fast algorithm for particle simulations
• An Implementation of the Fast Multipole Method without Multipoles

Cited In (1)

• Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model

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