Characterizing the topology of kinetoplast DNA using random knotting

DOI10.1090/CONM/746/15000MaRDI QIDQ3296019zbMATH OpenOpenAlexFDO

Authors Pengyu Liu, R. Polischuk, Y. Diao, J. Arsuaga

Publication date 3 July 2020

Published in Topology and Geometry of Biopolymers (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1090/conm/746/15000

zbMATH Keywords

percolation theoryGauss linking numberlinking probabilityDNA mini-circleskinetoplast DNA

Mathematics Subject Classification ID

Mathematical biology in general (92B99) Knot theory (57K10) Relations of manifolds and cell complexes with biology (57Z10)

Recommendations

• Properties of topological networks of flexible polygonal chains
• The effect of volume exclusion on the formation of DNA minicircle networks: implications to kinetoplast DNA
• The effects of density on the topological structure of the mitochondrial DNA from trypanosomes
• The growth of minicircle networks on regular lattices
• Estimating properties of kinetoplast DNA by fragmentation reactions

Cites work

• scientific article; zbMATH DE number 3826957 (Why is no real title available?)
• scientific article; zbMATH DE number 1218942 (Why is no real title available?)
• scientific article; zbMATH DE number 897152 (Why is no real title available?)
• A fast ergodic algorithm for generating ensembles of equilateral random polygons
• Gauss' linking number revisited
• Properties of topological networks of flexible polygonal chains
• The effect of angle restriction on the topological characteristics of minicircle networks
• The effect of volume exclusion on the formation of DNA minicircle networks: implications to kinetoplast DNA
• The effects of density on the topological structure of the mitochondrial DNA from trypanosomes
• The growth of minicircle networks on regular lattices

Cited in

(7)

• The growth of minicircle networks on regular lattices
• Estimating properties of kinetoplast DNA by fragmentation reactions
• Knotting of replication intermediates is narrowly restricted
• The effect of volume exclusion on the formation of DNA minicircle networks: implications to kinetoplast DNA
• The effects of density on the topological structure of the mitochondrial DNA from trypanosomes
• Topological patterns in two-dimensional gel electrophoresis of DNA knots
• The effect of angle restriction on the topological characteristics of minicircle networks

Describes a project that uses

Uses Software

• KnotPlot

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