Characterizing the topology of kinetoplast DNA using random knotting

DOI10.1090/CONM/746/15000zbMATH Open1446.57007OpenAlexW3009203986MaRDI QIDQ3296019FDOQ3296019

Authors: Pengyu Liu, R. Polischuk, Y. Diao, J. Arsuaga 

Publication date: 3 July 2020

Published in: Topology and Geometry of Biopolymers (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1090/conm/746/15000

Recommendations

• Properties of topological networks of flexible polygonal chains
• The effect of volume exclusion on the formation of DNA minicircle networks: implications to kinetoplast DNA
• The effects of density on the topological structure of the mitochondrial DNA from trypanosomes
• The growth of minicircle networks on regular lattices
• Estimating properties of kinetoplast DNA by fragmentation reactions

zbMATH Keywords

percolation theoryGauss linking numberlinking probabilityDNA mini-circleskinetoplast DNA

Mathematics Subject Classification ID

Mathematical biology in general (92B99) Knot theory (57K10) Relations of manifolds and cell complexes with biology (57Z10)

Cites Work

• A fast ergodic algorithm for generating ensembles of equilateral random polygons
• Title not available (Why is that?)
• Gauss' linking number revisited
• Title not available (Why is that?)
• Title not available (Why is that?)
• The effects of density on the topological structure of the mitochondrial DNA from trypanosomes
• The effect of angle restriction on the topological characteristics of minicircle networks
• Properties of topological networks of flexible polygonal chains
• The growth of minicircle networks on regular lattices
• The effect of volume exclusion on the formation of DNA minicircle networks: implications to kinetoplast DNA

Cited In (7)

• Estimating properties of kinetoplast DNA by fragmentation reactions
• Knotting of replication intermediates is narrowly restricted
• The effect of volume exclusion on the formation of DNA minicircle networks: implications to kinetoplast DNA
• The effects of density on the topological structure of the mitochondrial DNA from trypanosomes
• Topological patterns in two-dimensional gel electrophoresis of DNA knots
• The effect of angle restriction on the topological characteristics of minicircle networks
• The growth of minicircle networks on regular lattices

Uses Software

• KnotPlot

This page was built for publication: Characterizing the topology of kinetoplast DNA using random knotting

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3296019)