Characterizing the topology of kinetoplast DNA using random knotting

DOI10.1090/conm/746/15000zbMath1446.57007OpenAlexW3009203986MaRDI QIDQ3296019

R. Polischuk, Yuanan Diao, Pengyu Liu, Javier Arsuaga

Publication date: 3 July 2020

Published in: Topology and Geometry of Biopolymers (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1090/conm/746/15000

zbMATH Keywords

percolation theoryGauss linking numberlinking probabilityDNA mini-circleskinetoplast DNA

Mathematics Subject Classification ID

Mathematical biology in general (92B99) Knot theory (57K10) Relations of manifolds and cell complexes with biology (57Z10)

Uses Software

• KnotPlot

Cites Work

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• The effects of density on the topological structure of the mitochondrial DNA from trypanosomes
• The effect of angle restriction on the topological characteristics of minicircle networks
• Properties of topological networks of flexible polygonal chains
• GAUSS' LINKING NUMBER REVISITED
• The growth of minicircle networks on regular lattices
• The effect of volume exclusion on the formation of DNA minicircle networks: implications to kinetoplast DNA
• A fast ergodic algorithm for generating ensembles of equilateral random polygons

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