Mathematical modeling for 2D light-sheet fluorescence microscopy image reconstruction

DOI10.1088/1361-6420/ab80d8zbMath1444.65062arXiv1909.04174OpenAlexW3101474177MaRDI QIDQ3298400

Evelyn Cueva, Matias Courdurier, Steffen Härtel, Victor Castañeda, Benjamín Palacios, Axel Osses

Publication date: 14 July 2020

Published in: Inverse Problems (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1909.04174

zbMATH Keywords

heat equationradiative transfer equationbackward uniquenessalgebraic reconstruction techniquesmicroscopyFermi pencil-beam equationLSFM

Mathematics Subject Classification ID

Biomedical imaging and signal processing (92C55) Inverse problems for PDEs (35R30) Numerical methods for inverse problems for boundary value problems involving PDEs (65N21) Fokker-Planck equations (35Q84)

Related Items (6)

Erratum: Lipschitz Stability for Backward Heat Equation with Application to Fluorescence Microscopy ⋮ Tomographic inverse problems: mathematical challenges and novel applications. Abstracts from the workshop held April 30 -- May 5, 2023 ⋮ Pencil-Beam Approximation of Stationary Fokker--Planck ⋮ Lipschitz Stability for Backward Heat Equation with Application to Fluorescence Microscopy ⋮ Pencil-beam approximation of fractional Fokker-Planck ⋮ Image reconstruction in light-sheet microscopy: spatially varying deconvolution and mixed noise

Uses Software

• Regularization tools
• AIR tools
• IR Tools

Cites Work

• Nonlinear total variation based noise removal algorithms
• A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems
• The identification problem for the constantly attenuated Radon transform
• AIR tools II: algebraic iterative reconstruction methods, improved implementation
• IR tools: a MATLAB package of iterative regularization methods and large-scale test problems
• Reinforcement Learning and Wavelet Adapted Vortex Methods for Simulations of Self-propelled Swimmers
• Combined source and attenuation reconstructions in SPECT
• The identification problem for the attenuated X-ray transform
• A uniqueness theorem for parabolic equations
• Simultaneous source and attenuation reconstruction in SPECT using ballistic and single scattering data
• Inverse transport theory and applications
• PURE-LET Image Deconvolution
• The identification problem for the exponential Radon transform
• Discrete Inverse Problems
• Inverse Source Problems in Transport Equations
• Non-negativity and iterative methods for ill-posed problems
• Fast Nonnegative Least Squares Through Flexible Krylov Subspaces

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