Generalized theory on the mechanism of site-specific DNA–protein interactions

DOI10.1088/1742-5468/2016/05/053501zbMath1459.92065OpenAlexW2395162078MaRDI QIDQ3302667

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Publication date: 11 August 2020

Published in: Journal of Statistical Mechanics: Theory and Experiment (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1088/1742-5468/2016/05/053501

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Related Items (3)

Classical density functional theory and Monte Carlo simulation study of electric double layer in the vicinity of a cylindrical electrode ⋮ Target search of a protein on DNA in the presence of position-dependent bias ⋮ Theory on the looping mediated directional-dependent propulsion of transcription factors along DNA

Cites Work

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• The Fokker-Planck equation. Methods of solution and applications.
• Action at distance along the DNA: a random jump model on enhancer action
• Mean first passage time calculation for the random walk with random step size
• Theory of site-specific interactions of the combinatorial transcription factors with DNA
• How a protein searches for its site on DNA: the mechanism of facilitated diffusion
• Mean first passage time calculation for a one-dimensional random walk with random absorbing boundary
• Handbook of stochastic methods for physics, chemistry and the natural sciences.

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